Hb_000309_050

Information

Type -
Description -
Location Contig309: 69190-71799
Sequence    

Annotation

kegg
ID rcu:RCOM_0850610
description hypothetical protein
nr
ID XP_012081711.1
description PREDICTED: CASP-like protein 4A1 isoform X1 [Jatropha curcas]
swissprot
ID Q9FNE8
description CASP-like protein 4A1 OS=Arabidopsis thaliana GN=At5g40300 PE=2 SV=1
trembl
ID A0A0D2NEI8
description Gossypium raimondii chromosome 1, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_001G261500 PE=4 SV=1
Gene Ontology
ID GO:0016020
description casp-like protein at5g40300

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32617: 70088-70629
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000309_050 0.0 - - PREDICTED: CASP-like protein 4A1 isoform X1 [Jatropha curcas]
2 Hb_000185_220 0.0685495784 - - PREDICTED: uncharacterized protein LOC105631115 [Jatropha curcas]
3 Hb_003206_110 0.0800571524 - - Putative 1-aminocyclopropane-1-carboxylate deaminase [Gossypium arboreum]
4 Hb_004480_100 0.0802792121 - - PREDICTED: calcium homeostasis endoplasmic reticulum protein [Jatropha curcas]
5 Hb_001975_150 0.0811785174 - - PREDICTED: RINT1-like protein MAG2L [Jatropha curcas]
6 Hb_000504_180 0.0828145683 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
7 Hb_000297_120 0.0856362179 - - PREDICTED: sorting nexin 1 [Jatropha curcas]
8 Hb_006059_010 0.0878934121 - - PREDICTED: uncharacterized protein LOC105648671 [Jatropha curcas]
9 Hb_000789_200 0.088411244 - - mitochondrial processing peptidase alpha subunit, putative [Ricinus communis]
10 Hb_000613_070 0.0905513797 - - -
11 Hb_001080_300 0.092254084 - - PREDICTED: F-box protein SKIP17-like [Jatropha curcas]
12 Hb_002768_060 0.0924170573 - - PREDICTED: probable beta-1,3-galactosyltransferase 2 isoform X1 [Jatropha curcas]
13 Hb_158530_020 0.0929443253 - - PREDICTED: aspartic proteinase CDR1 [Jatropha curcas]
14 Hb_000035_390 0.0959635644 - - hypothetical protein CISIN_1g003355mg [Citrus sinensis]
15 Hb_004046_030 0.0974379699 - - PREDICTED: GPCR-type G protein 1 [Jatropha curcas]
16 Hb_170138_010 0.0981329559 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001951_220 0.1002661213 - - PREDICTED: CTD small phosphatase-like protein 2 isoform X5 [Jatropha curcas]
18 Hb_003517_070 0.1015088851 - - PREDICTED: protein transport protein Sec24-like At3g07100 [Jatropha curcas]
19 Hb_001910_010 0.1024493963 - - Dual specificity protein phosphatase, putative [Ricinus communis]
20 Hb_000029_140 0.1027842736 - - PREDICTED: putative GDP-L-fucose synthase 2 [Populus euphratica]

Gene co-expression network

sample Hb_000309_050 Hb_000309_050 Hb_000185_220 Hb_000185_220 Hb_000309_050--Hb_000185_220 Hb_003206_110 Hb_003206_110 Hb_000309_050--Hb_003206_110 Hb_004480_100 Hb_004480_100 Hb_000309_050--Hb_004480_100 Hb_001975_150 Hb_001975_150 Hb_000309_050--Hb_001975_150 Hb_000504_180 Hb_000504_180 Hb_000309_050--Hb_000504_180 Hb_000297_120 Hb_000297_120 Hb_000309_050--Hb_000297_120 Hb_006059_010 Hb_006059_010 Hb_000185_220--Hb_006059_010 Hb_001195_400 Hb_001195_400 Hb_000185_220--Hb_001195_400 Hb_000185_220--Hb_003206_110 Hb_001080_300 Hb_001080_300 Hb_000185_220--Hb_001080_300 Hb_000185_220--Hb_001975_150 Hb_170138_010 Hb_170138_010 Hb_003206_110--Hb_170138_010 Hb_004046_030 Hb_004046_030 Hb_003206_110--Hb_004046_030 Hb_003206_110--Hb_001195_400 Hb_000359_210 Hb_000359_210 Hb_003206_110--Hb_000359_210 Hb_006277_010 Hb_006277_010 Hb_003206_110--Hb_006277_010 Hb_002768_060 Hb_002768_060 Hb_004480_100--Hb_002768_060 Hb_000789_200 Hb_000789_200 Hb_004480_100--Hb_000789_200 Hb_002908_050 Hb_002908_050 Hb_004480_100--Hb_002908_050 Hb_001789_150 Hb_001789_150 Hb_004480_100--Hb_001789_150 Hb_001876_010 Hb_001876_010 Hb_004480_100--Hb_001876_010 Hb_001951_220 Hb_001951_220 Hb_004480_100--Hb_001951_220 Hb_011537_060 Hb_011537_060 Hb_001975_150--Hb_011537_060 Hb_001975_150--Hb_000504_180 Hb_004218_180 Hb_004218_180 Hb_001975_150--Hb_004218_180 Hb_000635_060 Hb_000635_060 Hb_001975_150--Hb_000635_060 Hb_003517_070 Hb_003517_070 Hb_001975_150--Hb_003517_070 Hb_001716_040 Hb_001716_040 Hb_000504_180--Hb_001716_040 Hb_158530_020 Hb_158530_020 Hb_000504_180--Hb_158530_020 Hb_000504_180--Hb_001951_220 Hb_009296_080 Hb_009296_080 Hb_000504_180--Hb_009296_080 Hb_005582_040 Hb_005582_040 Hb_000504_180--Hb_005582_040 Hb_032920_070 Hb_032920_070 Hb_000297_120--Hb_032920_070 Hb_000297_120--Hb_000185_220 Hb_006683_070 Hb_006683_070 Hb_000297_120--Hb_006683_070 Hb_001307_030 Hb_001307_030 Hb_000297_120--Hb_001307_030 Hb_000297_120--Hb_006059_010 Hb_002660_170 Hb_002660_170 Hb_000297_120--Hb_002660_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.27143 8.7072 7.87464 18.0345 5.75105 6.71605
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.0582 9.51389 13.3361 15.7838 24.8396

CAGE analysis