Hb_001307_030

Information

Type -
Description -
Location Contig1307: 8858-14706
Sequence    

Annotation

kegg
ID pop:POPTR_0002s26120g
description POPTRDRAFT_553334; Succinyl-CoA ligase beta-chain family protein
nr
ID XP_012085271.1
description PREDICTED: succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial [Jatropha curcas]
swissprot
ID O82662
description Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial OS=Arabidopsis thaliana GN=At2g20420 PE=1 SV=1
trembl
ID A0A067JUK1
description Succinyl-CoA ligase subunit beta OS=Jatropha curcas GN=JCGZ_17656 PE=3 SV=1
Gene Ontology
ID GO:0005507
description succinyl- ligase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09087: 8829-14579 , PASA_asmbl_09088: 15327-17209
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001307_030 0.0 - - PREDICTED: succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial [Jatropha curcas]
2 Hb_025098_010 0.0657881281 - - PREDICTED: protoheme IX farnesyltransferase, mitochondrial isoform X2 [Jatropha curcas]
3 Hb_008566_030 0.0662814312 - - hypothetical protein POPTR_0013s02780g [Populus trichocarpa]
4 Hb_185255_010 0.0742149128 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 11-like [Jatropha curcas]
5 Hb_011249_020 0.0767313463 - - PREDICTED: putative clathrin assembly protein At5g35200 [Jatropha curcas]
6 Hb_000297_120 0.0772785601 - - PREDICTED: sorting nexin 1 [Jatropha curcas]
7 Hb_000329_210 0.0831767969 - - Golgi snare 12 isoform 1 [Theobroma cacao]
8 Hb_005144_050 0.0849042021 - - PREDICTED: S-adenosylmethionine synthase 1 isoform X2 [Vitis vinifera]
9 Hb_000060_050 0.0857177174 - - PREDICTED: uncharacterized protein LOC105649718 [Jatropha curcas]
10 Hb_003305_040 0.087873057 - - AP47/50p mRNA family protein [Populus trichocarpa]
11 Hb_002392_010 0.0889720619 - - PREDICTED: apurinic endonuclease-redox protein isoform X4 [Jatropha curcas]
12 Hb_000483_300 0.0899602683 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic [Populus euphratica]
13 Hb_001366_180 0.090371952 - - PREDICTED: translocase of chloroplast 33, chloroplastic-like [Jatropha curcas]
14 Hb_003376_250 0.0913189097 - - Transducin/WD40 repeat-like superfamily protein [Theobroma cacao]
15 Hb_008841_020 0.0913785212 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105631075 isoform X1 [Jatropha curcas]
16 Hb_006683_070 0.0916557634 - - PREDICTED: uncharacterized protein LOC105631443 [Jatropha curcas]
17 Hb_011344_190 0.0925579325 - - PREDICTED: maspardin [Jatropha curcas]
18 Hb_000173_410 0.0944392095 - - PREDICTED: BI1-like protein [Jatropha curcas]
19 Hb_000347_240 0.0945605647 - - PREDICTED: proteasome subunit alpha type-6 [Pyrus x bretschneideri]
20 Hb_000649_140 0.0952159723 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase setd3 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001307_030 Hb_001307_030 Hb_025098_010 Hb_025098_010 Hb_001307_030--Hb_025098_010 Hb_008566_030 Hb_008566_030 Hb_001307_030--Hb_008566_030 Hb_185255_010 Hb_185255_010 Hb_001307_030--Hb_185255_010 Hb_011249_020 Hb_011249_020 Hb_001307_030--Hb_011249_020 Hb_000297_120 Hb_000297_120 Hb_001307_030--Hb_000297_120 Hb_000329_210 Hb_000329_210 Hb_001307_030--Hb_000329_210 Hb_025098_010--Hb_185255_010 Hb_000310_090 Hb_000310_090 Hb_025098_010--Hb_000310_090 Hb_005144_050 Hb_005144_050 Hb_025098_010--Hb_005144_050 Hb_002289_080 Hb_002289_080 Hb_025098_010--Hb_002289_080 Hb_008841_020 Hb_008841_020 Hb_025098_010--Hb_008841_020 Hb_001541_120 Hb_001541_120 Hb_008566_030--Hb_001541_120 Hb_000116_260 Hb_000116_260 Hb_008566_030--Hb_000116_260 Hb_002677_020 Hb_002677_020 Hb_008566_030--Hb_002677_020 Hb_001514_120 Hb_001514_120 Hb_008566_030--Hb_001514_120 Hb_007416_060 Hb_007416_060 Hb_008566_030--Hb_007416_060 Hb_006683_070 Hb_006683_070 Hb_185255_010--Hb_006683_070 Hb_185255_010--Hb_005144_050 Hb_001269_190 Hb_001269_190 Hb_185255_010--Hb_001269_190 Hb_001489_110 Hb_001489_110 Hb_185255_010--Hb_001489_110 Hb_012244_010 Hb_012244_010 Hb_011249_020--Hb_012244_010 Hb_011249_020--Hb_000297_120 Hb_000240_030 Hb_000240_030 Hb_011249_020--Hb_000240_030 Hb_000649_140 Hb_000649_140 Hb_011249_020--Hb_000649_140 Hb_011249_020--Hb_006683_070 Hb_032920_070 Hb_032920_070 Hb_000297_120--Hb_032920_070 Hb_000185_220 Hb_000185_220 Hb_000297_120--Hb_000185_220 Hb_000297_120--Hb_006683_070 Hb_006059_010 Hb_006059_010 Hb_000297_120--Hb_006059_010 Hb_002660_170 Hb_002660_170 Hb_000297_120--Hb_002660_170 Hb_076233_040 Hb_076233_040 Hb_000329_210--Hb_076233_040 Hb_004257_010 Hb_004257_010 Hb_000329_210--Hb_004257_010 Hb_002184_090 Hb_002184_090 Hb_000329_210--Hb_002184_090 Hb_024128_020 Hb_024128_020 Hb_000329_210--Hb_024128_020 Hb_000617_200 Hb_000617_200 Hb_000329_210--Hb_000617_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.5715 16.1729 28.0718 64.6232 20.7772 25.9565
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
45.1999 54.3622 54.3687 42.1635 60.8373

CAGE analysis