Hb_006059_010

Information

Type -
Description -
Location Contig6059: 3571-9754
Sequence    

Annotation

kegg
ID rcu:RCOM_1502640
description hypothetical protein
nr
ID XP_012090525.1
description PREDICTED: uncharacterized protein LOC105648671 [Jatropha curcas]
swissprot
ID Q6GQ39
description Transmembrane protein 135 OS=Xenopus laevis GN=tmem135 PE=2 SV=1
trembl
ID A0A067JF66
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26323 PE=4 SV=1
Gene Ontology
ID GO:0016021
description mitochondrial import inner membrane translocase subunit tim17 tim22 tim23 family protein isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50753: 5942-9759
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006059_010 0.0 - - PREDICTED: uncharacterized protein LOC105648671 [Jatropha curcas]
2 Hb_000185_220 0.0630738418 - - PREDICTED: uncharacterized protein LOC105631115 [Jatropha curcas]
3 Hb_000012_310 0.063077052 - - PREDICTED: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like isoform X2 [Jatropha curcas]
4 Hb_002660_170 0.069455339 - - PREDICTED: dystrophia myotonica WD repeat-containing protein isoform X2 [Jatropha curcas]
5 Hb_000109_180 0.0737024208 - - PREDICTED: AP-1 complex subunit gamma-2-like [Jatropha curcas]
6 Hb_008748_030 0.0776495365 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000297_120 0.0779817902 - - PREDICTED: sorting nexin 1 [Jatropha curcas]
8 Hb_158530_020 0.0808057019 - - PREDICTED: aspartic proteinase CDR1 [Jatropha curcas]
9 Hb_002477_290 0.0818158391 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial-like [Jatropha curcas]
10 Hb_001975_150 0.0821932485 - - PREDICTED: RINT1-like protein MAG2L [Jatropha curcas]
11 Hb_007218_120 0.0828840283 - - PREDICTED: pentatricopeptide repeat-containing protein At1g51965, mitochondrial [Jatropha curcas]
12 Hb_005653_070 0.0841126834 - - K+ transport growth defect-like protein [Hevea brasiliensis]
13 Hb_000504_180 0.0853245695 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
14 Hb_000227_160 0.0864399034 - - PREDICTED: E3 ubiquitin-protein ligase RHF1A [Jatropha curcas]
15 Hb_000638_130 0.0869978711 - - PREDICTED: SAL1 phosphatase-like [Jatropha curcas]
16 Hb_032920_070 0.0870592706 - - PREDICTED: zinc finger protein-like 1 homolog [Jatropha curcas]
17 Hb_000309_050 0.0878934121 - - PREDICTED: CASP-like protein 4A1 isoform X1 [Jatropha curcas]
18 Hb_003305_040 0.0895134202 - - AP47/50p mRNA family protein [Populus trichocarpa]
19 Hb_000029_140 0.0910924466 - - PREDICTED: putative GDP-L-fucose synthase 2 [Populus euphratica]
20 Hb_000035_390 0.0916200086 - - hypothetical protein CISIN_1g003355mg [Citrus sinensis]

Gene co-expression network

sample Hb_006059_010 Hb_006059_010 Hb_000185_220 Hb_000185_220 Hb_006059_010--Hb_000185_220 Hb_000012_310 Hb_000012_310 Hb_006059_010--Hb_000012_310 Hb_002660_170 Hb_002660_170 Hb_006059_010--Hb_002660_170 Hb_000109_180 Hb_000109_180 Hb_006059_010--Hb_000109_180 Hb_008748_030 Hb_008748_030 Hb_006059_010--Hb_008748_030 Hb_000297_120 Hb_000297_120 Hb_006059_010--Hb_000297_120 Hb_001195_400 Hb_001195_400 Hb_000185_220--Hb_001195_400 Hb_003206_110 Hb_003206_110 Hb_000185_220--Hb_003206_110 Hb_001080_300 Hb_001080_300 Hb_000185_220--Hb_001080_300 Hb_000309_050 Hb_000309_050 Hb_000185_220--Hb_000309_050 Hb_001975_150 Hb_001975_150 Hb_000185_220--Hb_001975_150 Hb_000012_310--Hb_008748_030 Hb_006452_120 Hb_006452_120 Hb_000012_310--Hb_006452_120 Hb_001789_150 Hb_001789_150 Hb_000012_310--Hb_001789_150 Hb_000574_450 Hb_000574_450 Hb_000012_310--Hb_000574_450 Hb_000012_310--Hb_002660_170 Hb_000025_190 Hb_000025_190 Hb_002660_170--Hb_000025_190 Hb_007218_120 Hb_007218_120 Hb_002660_170--Hb_007218_120 Hb_000060_050 Hb_000060_050 Hb_002660_170--Hb_000060_050 Hb_002477_290 Hb_002477_290 Hb_002660_170--Hb_002477_290 Hb_000109_180--Hb_008748_030 Hb_000109_180--Hb_000012_310 Hb_000227_160 Hb_000227_160 Hb_000109_180--Hb_000227_160 Hb_000363_040 Hb_000363_040 Hb_000109_180--Hb_000363_040 Hb_005305_050 Hb_005305_050 Hb_000109_180--Hb_005305_050 Hb_008748_030--Hb_000227_160 Hb_008748_030--Hb_006452_120 Hb_008748_030--Hb_000574_450 Hb_028487_160 Hb_028487_160 Hb_008748_030--Hb_028487_160 Hb_000778_010 Hb_000778_010 Hb_008748_030--Hb_000778_010 Hb_032920_070 Hb_032920_070 Hb_000297_120--Hb_032920_070 Hb_000297_120--Hb_000185_220 Hb_006683_070 Hb_006683_070 Hb_000297_120--Hb_006683_070 Hb_001307_030 Hb_001307_030 Hb_000297_120--Hb_001307_030 Hb_000297_120--Hb_002660_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.24151 6.51903 6.54126 12.9179 2.88331 3.4859
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.72389 7.55942 9.04196 9.79506 11.8845

CAGE analysis