Hb_000227_160

Information

Type -
Description -
Location Contig227: 139149-142439
Sequence    

Annotation

kegg
ID rcu:RCOM_0913720
description protein binding protein, putative
nr
ID XP_012069557.1
description PREDICTED: E3 ubiquitin-protein ligase RHF1A [Jatropha curcas]
swissprot
ID Q4TU14
description E3 ubiquitin-protein ligase RHF1A OS=Arabidopsis thaliana GN=RHF1A PE=1 SV=1
trembl
ID A0A067KV90
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02129 PE=4 SV=1
Gene Ontology
ID GO:0008270
description e3 ubiquitin-protein ligase rhf1a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23606: 139222-141363 , PASA_asmbl_23607: 142057-142206
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000227_160 0.0 - - PREDICTED: E3 ubiquitin-protein ligase RHF1A [Jatropha curcas]
2 Hb_008748_030 0.0493771605 - - conserved hypothetical protein [Ricinus communis]
3 Hb_028487_160 0.058484875 - - clathrin assembly protein, putative [Ricinus communis]
4 Hb_012262_030 0.0599924401 - - PREDICTED: thylakoidal processing peptidase 1, chloroplastic-like [Jatropha curcas]
5 Hb_000367_090 0.0717163135 - - PREDICTED: plant intracellular Ras-group-related LRR protein 7 [Jatropha curcas]
6 Hb_008289_040 0.072038278 - - PREDICTED: suppressor of mec-8 and unc-52 protein homolog 1 [Jatropha curcas]
7 Hb_000029_190 0.0726152225 - - hypothetical protein CISIN_1g025338mg [Citrus sinensis]
8 Hb_006452_120 0.0727669247 - - PREDICTED: protein FAM188A [Jatropha curcas]
9 Hb_000023_300 0.0736356675 - - Ubiquitin carboxyl-terminal hydrolase, putative [Ricinus communis]
10 Hb_189216_010 0.0742900168 - - PREDICTED: uncharacterized protein LOC105642236 isoform X1 [Jatropha curcas]
11 Hb_000109_180 0.0755450662 - - PREDICTED: AP-1 complex subunit gamma-2-like [Jatropha curcas]
12 Hb_002042_050 0.0769381878 - - PREDICTED: uncharacterized protein LOC105647554 isoform X1 [Jatropha curcas]
13 Hb_007904_300 0.0786349641 - - copine, putative [Ricinus communis]
14 Hb_020178_040 0.0793167094 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000012_310 0.0799459448 - - PREDICTED: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like isoform X2 [Jatropha curcas]
16 Hb_002272_030 0.081770286 - - PREDICTED: cation/calcium exchanger 5 [Jatropha curcas]
17 Hb_000535_050 0.085109698 - - PREDICTED: cytosolic Fe-S cluster assembly factor narfl [Jatropha curcas]
18 Hb_000778_010 0.0851865145 - - hypothetical protein [Bacillus subtilis]
19 Hb_023344_150 0.0860872549 - - PREDICTED: uncharacterized protein LOC105644462 [Jatropha curcas]
20 Hb_006059_010 0.0864399034 - - PREDICTED: uncharacterized protein LOC105648671 [Jatropha curcas]

Gene co-expression network

sample Hb_000227_160 Hb_000227_160 Hb_008748_030 Hb_008748_030 Hb_000227_160--Hb_008748_030 Hb_028487_160 Hb_028487_160 Hb_000227_160--Hb_028487_160 Hb_012262_030 Hb_012262_030 Hb_000227_160--Hb_012262_030 Hb_000367_090 Hb_000367_090 Hb_000227_160--Hb_000367_090 Hb_008289_040 Hb_008289_040 Hb_000227_160--Hb_008289_040 Hb_000029_190 Hb_000029_190 Hb_000227_160--Hb_000029_190 Hb_000012_310 Hb_000012_310 Hb_008748_030--Hb_000012_310 Hb_006452_120 Hb_006452_120 Hb_008748_030--Hb_006452_120 Hb_000574_450 Hb_000574_450 Hb_008748_030--Hb_000574_450 Hb_008748_030--Hb_028487_160 Hb_000778_010 Hb_000778_010 Hb_008748_030--Hb_000778_010 Hb_028487_160--Hb_006452_120 Hb_004994_020 Hb_004994_020 Hb_028487_160--Hb_004994_020 Hb_028487_160--Hb_000367_090 Hb_028487_160--Hb_008289_040 Hb_000023_300 Hb_000023_300 Hb_012262_030--Hb_000023_300 Hb_004994_180 Hb_004994_180 Hb_012262_030--Hb_004994_180 Hb_189216_010 Hb_189216_010 Hb_012262_030--Hb_189216_010 Hb_012262_030--Hb_008748_030 Hb_001454_230 Hb_001454_230 Hb_012262_030--Hb_001454_230 Hb_000046_170 Hb_000046_170 Hb_000367_090--Hb_000046_170 Hb_002357_060 Hb_002357_060 Hb_000367_090--Hb_002357_060 Hb_004705_170 Hb_004705_170 Hb_000367_090--Hb_004705_170 Hb_000367_090--Hb_189216_010 Hb_021165_010 Hb_021165_010 Hb_008289_040--Hb_021165_010 Hb_016172_030 Hb_016172_030 Hb_008289_040--Hb_016172_030 Hb_000173_130 Hb_000173_130 Hb_008289_040--Hb_000173_130 Hb_065500_020 Hb_065500_020 Hb_008289_040--Hb_065500_020 Hb_000406_210 Hb_000406_210 Hb_008289_040--Hb_000406_210 Hb_000703_330 Hb_000703_330 Hb_008289_040--Hb_000703_330 Hb_000029_190--Hb_012262_030 Hb_006006_040 Hb_006006_040 Hb_000029_190--Hb_006006_040 Hb_000029_190--Hb_008289_040 Hb_000012_240 Hb_000012_240 Hb_000029_190--Hb_000012_240 Hb_023344_150 Hb_023344_150 Hb_000029_190--Hb_023344_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.21645 8.3579 8.82507 14.352 3.35832 4.90007
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.27813 6.44396 7.76868 10.6431 8.56879

CAGE analysis