Hb_006006_040

Information

Type -
Description -
Location Contig6006: 72937-78404
Sequence    

Annotation

kegg
ID rcu:RCOM_0811160
description Methylthioribose kinase, putative (EC:2.7.1.100)
nr
ID XP_007042544.1
description S-methyl-5-thioribose kinase isoform 2 [Theobroma cacao]
swissprot
ID Q9C6D2
description Methylthioribose kinase OS=Arabidopsis thaliana GN=MTK PE=1 SV=1
trembl
ID A0A061E074
description S-methyl-5-thioribose kinase isoform 2 OS=Theobroma cacao GN=TCM_007151 PE=3 SV=1
Gene Ontology
ID GO:0046522
description methylthioribose kinase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50565: 73589-78342
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006006_040 0.0 - - S-methyl-5-thioribose kinase isoform 2 [Theobroma cacao]
2 Hb_003020_100 0.0574083725 - - PREDICTED: transcription initiation factor IIA large subunit [Jatropha curcas]
3 Hb_005215_020 0.0649875685 transcription factor TF Family: MYB PREDICTED: transcription factor MYB44 [Jatropha curcas]
4 Hb_000085_450 0.0762241709 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 20 [Jatropha curcas]
5 Hb_001329_200 0.0771876767 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 1 [Jatropha curcas]
6 Hb_001328_080 0.0781671528 - - PREDICTED: importin subunit alpha-1b [Jatropha curcas]
7 Hb_007409_040 0.0790061617 - - actin family protein [Populus trichocarpa]
8 Hb_001500_100 0.0799938955 - - conserved hypothetical protein [Ricinus communis]
9 Hb_019280_010 0.0804778246 - - PREDICTED: F-box protein At5g39450 isoform X2 [Jatropha curcas]
10 Hb_015026_130 0.0807952872 - - quinone oxidoreductase, putative [Ricinus communis]
11 Hb_001114_110 0.0812044383 - - PREDICTED: probable ubiquitin-like-specific protease 2A isoform X1 [Jatropha curcas]
12 Hb_000089_180 0.0823360201 - - PREDICTED: homoserine kinase-like [Jatropha curcas]
13 Hb_007839_020 0.0849273397 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000023_300 0.0854400213 - - Ubiquitin carboxyl-terminal hydrolase, putative [Ricinus communis]
15 Hb_021165_010 0.0872590287 - - PREDICTED: splicing factor U2af large subunit B-like isoform X1 [Jatropha curcas]
16 Hb_003544_030 0.0891548665 - - PREDICTED: citrate synthase, glyoxysomal [Jatropha curcas]
17 Hb_009615_160 0.0900732651 - - PREDICTED: pyruvate kinase, cytosolic isozyme [Jatropha curcas]
18 Hb_001097_040 0.0906749315 - - PREDICTED: probable dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 3B [Jatropha curcas]
19 Hb_011360_050 0.0909895677 - - PREDICTED: BAG family molecular chaperone regulator 8, chloroplastic [Jatropha curcas]
20 Hb_002982_020 0.0914503619 - - PREDICTED: putative ER lumen protein-retaining receptor C28H8.4 [Jatropha curcas]

Gene co-expression network

sample Hb_006006_040 Hb_006006_040 Hb_003020_100 Hb_003020_100 Hb_006006_040--Hb_003020_100 Hb_005215_020 Hb_005215_020 Hb_006006_040--Hb_005215_020 Hb_000085_450 Hb_000085_450 Hb_006006_040--Hb_000085_450 Hb_001329_200 Hb_001329_200 Hb_006006_040--Hb_001329_200 Hb_001328_080 Hb_001328_080 Hb_006006_040--Hb_001328_080 Hb_007409_040 Hb_007409_040 Hb_006006_040--Hb_007409_040 Hb_000322_080 Hb_000322_080 Hb_003020_100--Hb_000322_080 Hb_001500_100 Hb_001500_100 Hb_003020_100--Hb_001500_100 Hb_003020_100--Hb_000085_450 Hb_000836_460 Hb_000836_460 Hb_003020_100--Hb_000836_460 Hb_021165_010 Hb_021165_010 Hb_003020_100--Hb_021165_010 Hb_005215_020--Hb_000085_450 Hb_000089_180 Hb_000089_180 Hb_005215_020--Hb_000089_180 Hb_007839_020 Hb_007839_020 Hb_005215_020--Hb_007839_020 Hb_000656_150 Hb_000656_150 Hb_005215_020--Hb_000656_150 Hb_005215_020--Hb_001328_080 Hb_015026_130 Hb_015026_130 Hb_000085_450--Hb_015026_130 Hb_000085_450--Hb_000089_180 Hb_086063_020 Hb_086063_020 Hb_000085_450--Hb_086063_020 Hb_007137_050 Hb_007137_050 Hb_000085_450--Hb_007137_050 Hb_004037_020 Hb_004037_020 Hb_000085_450--Hb_004037_020 Hb_009615_160 Hb_009615_160 Hb_001329_200--Hb_009615_160 Hb_001329_200--Hb_007839_020 Hb_022425_060 Hb_022425_060 Hb_001329_200--Hb_022425_060 Hb_000802_090 Hb_000802_090 Hb_001329_200--Hb_000802_090 Hb_011360_050 Hb_011360_050 Hb_001329_200--Hb_011360_050 Hb_001329_200--Hb_001328_080 Hb_001328_080--Hb_007839_020 Hb_002915_060 Hb_002915_060 Hb_001328_080--Hb_002915_060 Hb_023344_150 Hb_023344_150 Hb_001328_080--Hb_023344_150 Hb_000926_260 Hb_000926_260 Hb_001328_080--Hb_000926_260 Hb_146051_010 Hb_146051_010 Hb_007409_040--Hb_146051_010 Hb_001454_230 Hb_001454_230 Hb_007409_040--Hb_001454_230 Hb_007409_040--Hb_001500_100 Hb_001051_070 Hb_001051_070 Hb_007409_040--Hb_001051_070 Hb_001114_110 Hb_001114_110 Hb_007409_040--Hb_001114_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.0533 29.9561 22.186 38.4627 10.2916 13.4638
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.446 13.0522 16.9165 33.6288 15.9642

CAGE analysis