Hb_001328_080

Information

Type -
Description -
Location Contig1328: 135295-137037
Sequence    

Annotation

kegg
ID tcc:TCM_002173
description ARM repeat superfamily protein
nr
ID XP_012080640.1
description PREDICTED: importin subunit alpha-1b [Jatropha curcas]
swissprot
ID Q9ZV31
description U-box domain-containing protein 12 OS=Arabidopsis thaliana GN=PUB12 PE=2 SV=1
trembl
ID A0A067K728
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13751 PE=4 SV=1
Gene Ontology
ID GO:0005515
description armadillo beta-catenin repeat family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09325: 133999-137186
cDNA
(Sanger)
(ID:Location)		 032_A12.ab1: 136591-137186

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001328_080 0.0 - - PREDICTED: importin subunit alpha-1b [Jatropha curcas]
2 Hb_007839_020 0.0674882186 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001329_200 0.0678794711 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 1 [Jatropha curcas]
4 Hb_002915_060 0.0702444549 - - PREDICTED: serine/threonine-protein kinase CTR1-like [Jatropha curcas]
5 Hb_006006_040 0.0781671528 - - S-methyl-5-thioribose kinase isoform 2 [Theobroma cacao]
6 Hb_023344_150 0.079206142 - - PREDICTED: uncharacterized protein LOC105644462 [Jatropha curcas]
7 Hb_000926_260 0.080752484 - - conserved hypothetical protein [Ricinus communis]
8 Hb_011360_050 0.0815810651 - - PREDICTED: BAG family molecular chaperone regulator 8, chloroplastic [Jatropha curcas]
9 Hb_000802_090 0.0837068083 - - ornithine aminotransferase, putative [Ricinus communis]
10 Hb_024650_080 0.0855585039 - - PREDICTED: BTB/POZ domain-containing protein At3g09030 [Jatropha curcas]
11 Hb_026198_060 0.0861893071 - - PREDICTED: calcium-dependent protein kinase 11 [Jatropha curcas]
12 Hb_001140_090 0.0863877136 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002232_480 0.0884072795 - - PREDICTED: telomerase reverse transcriptase [Jatropha curcas]
14 Hb_005215_020 0.0894766287 transcription factor TF Family: MYB PREDICTED: transcription factor MYB44 [Jatropha curcas]
15 Hb_001408_110 0.0912417398 - - hypothetical protein EUGRSUZ_I02762 [Eucalyptus grandis]
16 Hb_009615_160 0.0919373905 - - PREDICTED: pyruvate kinase, cytosolic isozyme [Jatropha curcas]
17 Hb_022425_060 0.0933195607 - - PREDICTED: protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein isoform X1 [Jatropha curcas]
18 Hb_003688_180 0.0934470802 - - PREDICTED: exocyst complex component EXO70B1 [Jatropha curcas]
19 Hb_003599_030 0.0934512468 - - PREDICTED: glucan endo-1,3-beta-glucosidase 4 isoform X3 [Jatropha curcas]
20 Hb_009372_020 0.0939860844 - - PREDICTED: protein transport protein Sec61 subunit alpha-like [Jatropha curcas]

Gene co-expression network

sample Hb_001328_080 Hb_001328_080 Hb_007839_020 Hb_007839_020 Hb_001328_080--Hb_007839_020 Hb_001329_200 Hb_001329_200 Hb_001328_080--Hb_001329_200 Hb_002915_060 Hb_002915_060 Hb_001328_080--Hb_002915_060 Hb_006006_040 Hb_006006_040 Hb_001328_080--Hb_006006_040 Hb_023344_150 Hb_023344_150 Hb_001328_080--Hb_023344_150 Hb_000926_260 Hb_000926_260 Hb_001328_080--Hb_000926_260 Hb_010407_080 Hb_010407_080 Hb_007839_020--Hb_010407_080 Hb_011360_050 Hb_011360_050 Hb_007839_020--Hb_011360_050 Hb_007839_020--Hb_001329_200 Hb_001408_110 Hb_001408_110 Hb_007839_020--Hb_001408_110 Hb_022425_060 Hb_022425_060 Hb_007839_020--Hb_022425_060 Hb_009615_160 Hb_009615_160 Hb_001329_200--Hb_009615_160 Hb_001329_200--Hb_022425_060 Hb_000802_090 Hb_000802_090 Hb_001329_200--Hb_000802_090 Hb_001329_200--Hb_011360_050 Hb_002915_060--Hb_007839_020 Hb_002915_060--Hb_011360_050 Hb_005215_020 Hb_005215_020 Hb_002915_060--Hb_005215_020 Hb_002915_060--Hb_023344_150 Hb_002982_020 Hb_002982_020 Hb_002915_060--Hb_002982_020 Hb_003020_100 Hb_003020_100 Hb_006006_040--Hb_003020_100 Hb_006006_040--Hb_005215_020 Hb_000085_450 Hb_000085_450 Hb_006006_040--Hb_000085_450 Hb_006006_040--Hb_001329_200 Hb_007409_040 Hb_007409_040 Hb_006006_040--Hb_007409_040 Hb_000983_050 Hb_000983_050 Hb_023344_150--Hb_000983_050 Hb_000731_200 Hb_000731_200 Hb_023344_150--Hb_000731_200 Hb_000023_300 Hb_000023_300 Hb_023344_150--Hb_000023_300 Hb_008748_030 Hb_008748_030 Hb_023344_150--Hb_008748_030 Hb_000227_160 Hb_000227_160 Hb_023344_150--Hb_000227_160 Hb_026198_010 Hb_026198_010 Hb_000926_260--Hb_026198_010 Hb_060094_010 Hb_060094_010 Hb_000926_260--Hb_060094_010 Hb_006468_010 Hb_006468_010 Hb_000926_260--Hb_006468_010 Hb_003636_080 Hb_003636_080 Hb_000926_260--Hb_003636_080 Hb_089140_040 Hb_089140_040 Hb_000926_260--Hb_089140_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.81311 17.1259 11.4627 17.1914 4.92722 5.14745
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.84292 7.99342 6.60985 12.0457 8.32224

CAGE analysis