Hb_000731_200

Information

Type -
Description -
Location Contig731: 189459-190670
Sequence    

Annotation

kegg
ID rcu:RCOM_0905260
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012091376.1
description PREDICTED: pentatricopeptide repeat-containing protein At1g61870, mitochondrial [Jatropha curcas]
swissprot
ID Q8LE47
description Pentatricopeptide repeat-containing protein At1g61870, mitochondrial OS=Arabidopsis thaliana GN=PPR336 PE=2 SV=2
trembl
ID A0A067JLA1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21241 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55980: 188138-189513
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000731_200 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At1g61870, mitochondrial [Jatropha curcas]
2 Hb_023344_150 0.0789540988 - - PREDICTED: uncharacterized protein LOC105644462 [Jatropha curcas]
3 Hb_189216_010 0.0880864242 - - PREDICTED: uncharacterized protein LOC105642236 isoform X1 [Jatropha curcas]
4 Hb_004531_150 0.0888801652 - - PREDICTED: peroxisome biogenesis protein 2 isoform X1 [Jatropha curcas]
5 Hb_000567_230 0.090085183 - - PREDICTED: peroxisome biogenesis protein 7 [Jatropha curcas]
6 Hb_006970_050 0.0932950562 transcription factor TF Family: EIL ETHYLENE-INSENSITIVE3 protein, putative [Ricinus communis]
7 Hb_000120_810 0.0940962807 - - serine/threonine-protein kinase cx32, putative [Ricinus communis]
8 Hb_001328_080 0.0951286293 - - PREDICTED: importin subunit alpha-1b [Jatropha curcas]
9 Hb_006100_020 0.0958018508 - - PREDICTED: inactive poly [ADP-ribose] polymerase RCD1 [Jatropha curcas]
10 Hb_007472_070 0.0960179822 - - cir, putative [Ricinus communis]
11 Hb_003098_070 0.0970837448 - - PREDICTED: uncharacterized protein LOC105633456 [Jatropha curcas]
12 Hb_000699_150 0.0978828805 - - PREDICTED: AT-hook motif nuclear-localized protein 14 [Jatropha curcas]
13 Hb_000521_330 0.0979684178 - - conserved hypothetical protein [Ricinus communis]
14 Hb_172426_030 0.0992111253 - - acetylglucosaminyltransferase, putative [Ricinus communis]
15 Hb_004607_090 0.0997592538 - - PREDICTED: uncharacterized protein LOC105648257 [Jatropha curcas]
16 Hb_002272_030 0.0998478027 - - PREDICTED: cation/calcium exchanger 5 [Jatropha curcas]
17 Hb_006261_050 0.099860703 transcription factor TF Family: C2C2-YABBY DNA-binding protein MNB1B, putative [Ricinus communis]
18 Hb_007839_020 0.0998669747 - - conserved hypothetical protein [Ricinus communis]
19 Hb_008748_030 0.1004554611 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000365_230 0.1009858762 - - PREDICTED: uncharacterized protein LOC105649056 [Jatropha curcas]

Gene co-expression network

sample Hb_000731_200 Hb_000731_200 Hb_023344_150 Hb_023344_150 Hb_000731_200--Hb_023344_150 Hb_189216_010 Hb_189216_010 Hb_000731_200--Hb_189216_010 Hb_004531_150 Hb_004531_150 Hb_000731_200--Hb_004531_150 Hb_000567_230 Hb_000567_230 Hb_000731_200--Hb_000567_230 Hb_006970_050 Hb_006970_050 Hb_000731_200--Hb_006970_050 Hb_000120_810 Hb_000120_810 Hb_000731_200--Hb_000120_810 Hb_000983_050 Hb_000983_050 Hb_023344_150--Hb_000983_050 Hb_001328_080 Hb_001328_080 Hb_023344_150--Hb_001328_080 Hb_000023_300 Hb_000023_300 Hb_023344_150--Hb_000023_300 Hb_008748_030 Hb_008748_030 Hb_023344_150--Hb_008748_030 Hb_000227_160 Hb_000227_160 Hb_023344_150--Hb_000227_160 Hb_005563_070 Hb_005563_070 Hb_189216_010--Hb_005563_070 Hb_000603_160 Hb_000603_160 Hb_189216_010--Hb_000603_160 Hb_002471_090 Hb_002471_090 Hb_189216_010--Hb_002471_090 Hb_000778_010 Hb_000778_010 Hb_189216_010--Hb_000778_010 Hb_189216_010--Hb_008748_030 Hb_002272_030 Hb_002272_030 Hb_189216_010--Hb_002272_030 Hb_001504_010 Hb_001504_010 Hb_004531_150--Hb_001504_010 Hb_005305_100 Hb_005305_100 Hb_004531_150--Hb_005305_100 Hb_003506_030 Hb_003506_030 Hb_004531_150--Hb_003506_030 Hb_006261_050 Hb_006261_050 Hb_004531_150--Hb_006261_050 Hb_001541_150 Hb_001541_150 Hb_004531_150--Hb_001541_150 Hb_021596_020 Hb_021596_020 Hb_004531_150--Hb_021596_020 Hb_002042_050 Hb_002042_050 Hb_000567_230--Hb_002042_050 Hb_000567_230--Hb_002272_030 Hb_001817_170 Hb_001817_170 Hb_000567_230--Hb_001817_170 Hb_000703_190 Hb_000703_190 Hb_000567_230--Hb_000703_190 Hb_006100_020 Hb_006100_020 Hb_000567_230--Hb_006100_020 Hb_000139_080 Hb_000139_080 Hb_000567_230--Hb_000139_080 Hb_009288_010 Hb_009288_010 Hb_006970_050--Hb_009288_010 Hb_006970_050--Hb_002272_030 Hb_000656_390 Hb_000656_390 Hb_006970_050--Hb_000656_390 Hb_000490_060 Hb_000490_060 Hb_006970_050--Hb_000490_060 Hb_002686_230 Hb_002686_230 Hb_006970_050--Hb_002686_230 Hb_006970_050--Hb_006100_020 Hb_000704_030 Hb_000704_030 Hb_000120_810--Hb_000704_030 Hb_026198_010 Hb_026198_010 Hb_000120_810--Hb_026198_010 Hb_004079_130 Hb_004079_130 Hb_000120_810--Hb_004079_130 Hb_000120_810--Hb_000603_160 Hb_000120_810--Hb_189216_010 Hb_000680_120 Hb_000680_120 Hb_000120_810--Hb_000680_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.94236 11.0942 10.8362 14.3466 3.40008 5.02109
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.24962 9.46088 5.4587 8.48787 10.5136

CAGE analysis