Hb_002471_090

Information

Type -
Description -
Location Contig2471: 74538-82040
Sequence    

Annotation

kegg
ID rcu:RCOM_1150230
description hypothetical protein
nr
ID XP_012072373.1
description PREDICTED: uncharacterized protein LOC105634169 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L112
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04813 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25646: 74684-123560
cDNA
(Sanger)
(ID:Location)		 005_G05.ab1: 81340-123560 , 028_J21.ab1: 81419-123560 , 036_F09.ab1: 81311-123560

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002471_090 0.0 - - PREDICTED: uncharacterized protein LOC105634169 [Jatropha curcas]
2 Hb_000521_240 0.0605746885 - - PREDICTED: uncharacterized protein LOC105650339 isoform X2 [Jatropha curcas]
3 Hb_189216_010 0.0681223725 - - PREDICTED: uncharacterized protein LOC105642236 isoform X1 [Jatropha curcas]
4 Hb_001635_190 0.0689806667 - - RNA m5u methyltransferase, putative [Ricinus communis]
5 Hb_000778_010 0.0727368327 - - hypothetical protein [Bacillus subtilis]
6 Hb_011218_090 0.0754625194 - - PREDICTED: autophagy-related protein 18a [Jatropha curcas]
7 Hb_020178_040 0.0785083414 - - conserved hypothetical protein [Ricinus communis]
8 Hb_172426_030 0.0787200781 - - acetylglucosaminyltransferase, putative [Ricinus communis]
9 Hb_002272_030 0.0800639601 - - PREDICTED: cation/calcium exchanger 5 [Jatropha curcas]
10 Hb_000392_420 0.0811880847 - - PREDICTED: probable aldehyde dehydrogenase isoform X1 [Jatropha curcas]
11 Hb_050847_050 0.0818858353 - - PREDICTED: uncharacterized protein LOC105649140 isoform X1 [Jatropha curcas]
12 Hb_000029_140 0.0849007987 - - PREDICTED: putative GDP-L-fucose synthase 2 [Populus euphratica]
13 Hb_010863_010 0.0857614321 transcription factor TF Family: C3H nucleic acid binding protein, putative [Ricinus communis]
14 Hb_000684_040 0.0862798216 - - PREDICTED: E3 ubiquitin-protein ligase MBR1 [Jatropha curcas]
15 Hb_002007_080 0.0867075903 - - PREDICTED: acyl-CoA-binding domain-containing protein 4-like [Jatropha curcas]
16 Hb_001716_040 0.0876429492 - - ribonuclease p/mrp subunit, putative [Ricinus communis]
17 Hb_008948_020 0.0878467211 - - hypothetical protein JCGZ_21216 [Jatropha curcas]
18 Hb_006824_010 0.0883378718 - - PREDICTED: origin of replication complex subunit 4 [Jatropha curcas]
19 Hb_003058_120 0.0887149873 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 4 homolog [Jatropha curcas]
20 Hb_000109_180 0.0894629955 - - PREDICTED: AP-1 complex subunit gamma-2-like [Jatropha curcas]

Gene co-expression network

sample Hb_002471_090 Hb_002471_090 Hb_000521_240 Hb_000521_240 Hb_002471_090--Hb_000521_240 Hb_189216_010 Hb_189216_010 Hb_002471_090--Hb_189216_010 Hb_001635_190 Hb_001635_190 Hb_002471_090--Hb_001635_190 Hb_000778_010 Hb_000778_010 Hb_002471_090--Hb_000778_010 Hb_011218_090 Hb_011218_090 Hb_002471_090--Hb_011218_090 Hb_020178_040 Hb_020178_040 Hb_002471_090--Hb_020178_040 Hb_000521_240--Hb_001635_190 Hb_000917_230 Hb_000917_230 Hb_000521_240--Hb_000917_230 Hb_001716_040 Hb_001716_040 Hb_000521_240--Hb_001716_040 Hb_010068_080 Hb_010068_080 Hb_000521_240--Hb_010068_080 Hb_000521_240--Hb_011218_090 Hb_005563_070 Hb_005563_070 Hb_189216_010--Hb_005563_070 Hb_000603_160 Hb_000603_160 Hb_189216_010--Hb_000603_160 Hb_189216_010--Hb_000778_010 Hb_008748_030 Hb_008748_030 Hb_189216_010--Hb_008748_030 Hb_002272_030 Hb_002272_030 Hb_189216_010--Hb_002272_030 Hb_001635_190--Hb_011218_090 Hb_002119_130 Hb_002119_130 Hb_001635_190--Hb_002119_130 Hb_001635_190--Hb_010068_080 Hb_002007_080 Hb_002007_080 Hb_001635_190--Hb_002007_080 Hb_000392_420 Hb_000392_420 Hb_000778_010--Hb_000392_420 Hb_000663_060 Hb_000663_060 Hb_000778_010--Hb_000663_060 Hb_000365_230 Hb_000365_230 Hb_000778_010--Hb_000365_230 Hb_164390_010 Hb_164390_010 Hb_000778_010--Hb_164390_010 Hb_007472_070 Hb_007472_070 Hb_000778_010--Hb_007472_070 Hb_000173_280 Hb_000173_280 Hb_000778_010--Hb_000173_280 Hb_000359_060 Hb_000359_060 Hb_011218_090--Hb_000359_060 Hb_000890_150 Hb_000890_150 Hb_011218_090--Hb_000890_150 Hb_000049_210 Hb_000049_210 Hb_011218_090--Hb_000049_210 Hb_004157_050 Hb_004157_050 Hb_011218_090--Hb_004157_050 Hb_149985_010 Hb_149985_010 Hb_011218_090--Hb_149985_010 Hb_000029_140 Hb_000029_140 Hb_011218_090--Hb_000029_140 Hb_020178_040--Hb_002272_030 Hb_002042_050 Hb_002042_050 Hb_020178_040--Hb_002042_050 Hb_001723_100 Hb_001723_100 Hb_020178_040--Hb_001723_100 Hb_002071_070 Hb_002071_070 Hb_020178_040--Hb_002071_070 Hb_000243_260 Hb_000243_260 Hb_020178_040--Hb_000243_260 Hb_000347_400 Hb_000347_400 Hb_020178_040--Hb_000347_400
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.3908 22.9415 21.9947 23.1016 8.39369 8.97415
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.7664 18.1433 20.7186 27.1818 20.3837

CAGE analysis