Hb_000049_210

Information

Type -
Description -
Location Contig49: 180618-183739
Sequence    

Annotation

kegg
ID rcu:RCOM_0996210
description hypothetical protein
nr
ID XP_012085207.1
description PREDICTED: uncharacterized protein LOC105644460 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K2F3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17608 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45267: 180625-183831 , PASA_asmbl_45268: 181784-182140
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000049_210 0.0 - - PREDICTED: uncharacterized protein LOC105644460 [Jatropha curcas]
2 Hb_005054_110 0.0506038452 - - PREDICTED: adenylosuccinate lyase-like [Jatropha curcas]
3 Hb_000710_060 0.0544815421 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC105645554 isoform X2 [Jatropha curcas]
4 Hb_149985_010 0.0562811188 - - PREDICTED: transcription initiation factor IIB-2 [Cucumis sativus]
5 Hb_000890_150 0.06287818 - - PREDICTED: E3 ubiquitin-protein ligase Topors isoform X1 [Jatropha curcas]
6 Hb_008725_230 0.0635894575 - - PREDICTED: CTP synthase [Jatropha curcas]
7 Hb_003847_030 0.0636021297 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15010, mitochondrial [Jatropha curcas]
8 Hb_019863_070 0.0660895961 - - PREDICTED: regulatory-associated protein of TOR 1 isoform X1 [Jatropha curcas]
9 Hb_000359_060 0.0689812663 - - PREDICTED: WD repeat-containing protein 26-like [Jatropha curcas]
10 Hb_000185_030 0.0692519367 - - PREDICTED: arginine-glutamic acid dipeptide repeats protein-like isoform X2 [Jatropha curcas]
11 Hb_011218_090 0.0693896999 - - PREDICTED: autophagy-related protein 18a [Jatropha curcas]
12 Hb_001016_120 0.0695869992 - - PREDICTED: 3-dehydroquinate synthase, chloroplastic [Jatropha curcas]
13 Hb_000297_010 0.0698787672 - - PREDICTED: uncharacterized protein LOC105637916 isoform X2 [Jatropha curcas]
14 Hb_023771_010 0.070127466 - - basic helix-loop-helix-containing protein, putative [Ricinus communis]
15 Hb_001633_210 0.0707922122 - - PREDICTED: RING finger protein 10 isoform X2 [Jatropha curcas]
16 Hb_011386_010 0.0713728837 - - mitochondrial carrier protein, putative [Ricinus communis]
17 Hb_001205_240 0.0736171236 - - PREDICTED: uncharacterized protein LOC105645528 [Jatropha curcas]
18 Hb_000787_020 0.0736759443 - - PREDICTED: glucose-6-phosphate/phosphate translocator 1, chloroplastic isoform X1 [Jatropha curcas]
19 Hb_000856_010 0.0738864246 - - PREDICTED: uncharacterized protein LOC105640466 [Jatropha curcas]
20 Hb_002450_020 0.0750759603 - - PREDICTED: probable transcriptional regulator SLK2 [Jatropha curcas]

Gene co-expression network

sample Hb_000049_210 Hb_000049_210 Hb_005054_110 Hb_005054_110 Hb_000049_210--Hb_005054_110 Hb_000710_060 Hb_000710_060 Hb_000049_210--Hb_000710_060 Hb_149985_010 Hb_149985_010 Hb_000049_210--Hb_149985_010 Hb_000890_150 Hb_000890_150 Hb_000049_210--Hb_000890_150 Hb_008725_230 Hb_008725_230 Hb_000049_210--Hb_008725_230 Hb_003847_030 Hb_003847_030 Hb_000049_210--Hb_003847_030 Hb_011386_010 Hb_011386_010 Hb_005054_110--Hb_011386_010 Hb_000260_350 Hb_000260_350 Hb_005054_110--Hb_000260_350 Hb_005054_110--Hb_149985_010 Hb_019863_070 Hb_019863_070 Hb_005054_110--Hb_019863_070 Hb_001304_110 Hb_001304_110 Hb_005054_110--Hb_001304_110 Hb_000185_030 Hb_000185_030 Hb_000710_060--Hb_000185_030 Hb_008770_030 Hb_008770_030 Hb_000710_060--Hb_008770_030 Hb_001633_210 Hb_001633_210 Hb_000710_060--Hb_001633_210 Hb_000297_010 Hb_000297_010 Hb_000710_060--Hb_000297_010 Hb_001205_240 Hb_001205_240 Hb_000710_060--Hb_001205_240 Hb_004109_220 Hb_004109_220 Hb_149985_010--Hb_004109_220 Hb_000574_450 Hb_000574_450 Hb_149985_010--Hb_000574_450 Hb_000359_060 Hb_000359_060 Hb_149985_010--Hb_000359_060 Hb_001016_120 Hb_001016_120 Hb_149985_010--Hb_001016_120 Hb_000890_150--Hb_000359_060 Hb_033594_080 Hb_033594_080 Hb_000890_150--Hb_033594_080 Hb_011218_090 Hb_011218_090 Hb_000890_150--Hb_011218_090 Hb_000787_020 Hb_000787_020 Hb_000890_150--Hb_000787_020 Hb_004078_040 Hb_004078_040 Hb_000890_150--Hb_004078_040 Hb_002232_410 Hb_002232_410 Hb_008725_230--Hb_002232_410 Hb_001359_050 Hb_001359_050 Hb_008725_230--Hb_001359_050 Hb_008725_230--Hb_001205_240 Hb_004324_130 Hb_004324_130 Hb_008725_230--Hb_004324_130 Hb_008725_230--Hb_000185_030 Hb_000028_370 Hb_000028_370 Hb_008725_230--Hb_000028_370 Hb_000327_180 Hb_000327_180 Hb_003847_030--Hb_000327_180 Hb_000614_250 Hb_000614_250 Hb_003847_030--Hb_000614_250 Hb_003847_030--Hb_005054_110 Hb_000497_300 Hb_000497_300 Hb_003847_030--Hb_000497_300 Hb_001014_030 Hb_001014_030 Hb_003847_030--Hb_001014_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.1218 13.1622 8.74878 14.1007 7.59688 9.34468
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.8497 15.4718 17.0701 15.1853 11.3477

CAGE analysis