Hb_000497_300

Information

Type -
Description -
Location Contig497: 250874-285091
Sequence    

Annotation

kegg
ID rcu:RCOM_1662980
description peroxisomal abc transporter, putative (EC:3.6.3.44)
nr
ID AHC69414.1
description peroxisomal membrane protein [Hevea brasiliensis]
swissprot
ID Q94FB9
description ABC transporter D family member 1 OS=Arabidopsis thaliana GN=ABCC1 PE=1 SV=1
trembl
ID V9TJF4
description Peroxisomal membrane protein OS=Hevea brasiliensis GN=PMP1 PE=2 SV=1
Gene Ontology
ID GO:0016021
description abc transporter d family member 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45536: 251513-285322 , PASA_asmbl_45537: 251513-285850
cDNA
(Sanger)
(ID:Location)		 051_H01.ab1: 280217-285322

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000497_300 0.0 - - peroxisomal membrane protein [Hevea brasiliensis]
2 Hb_010344_050 0.0540782728 - - Adagio 1 -like protein [Gossypium arboreum]
3 Hb_004712_130 0.0548954469 - - PREDICTED: uncharacterized protein LOC105633074 [Jatropha curcas]
4 Hb_001352_020 0.0586937557 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 8, mitochondrial-like [Jatropha curcas]
5 Hb_000116_260 0.0607741155 - - PREDICTED: uncharacterized protein LOC105628572 [Jatropha curcas]
6 Hb_164010_030 0.0659535813 - - PREDICTED: serine/threonine-protein kinase D6PK [Jatropha curcas]
7 Hb_001789_150 0.0711361917 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA-like isoform X1 [Jatropha curcas]
8 Hb_000406_140 0.0727612673 - - conserved hypothetical protein [Ricinus communis]
9 Hb_003847_030 0.074392891 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15010, mitochondrial [Jatropha curcas]
10 Hb_000913_020 0.0767910998 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
11 Hb_000471_110 0.0808506333 - - PREDICTED: pentatricopeptide repeat-containing protein At5g39980, chloroplastic [Jatropha curcas]
12 Hb_001818_100 0.081288954 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 11-like [Jatropha curcas]
13 Hb_001163_100 0.0817471922 - - serine/threonine protein kinase, putative [Ricinus communis]
14 Hb_002450_020 0.0831956405 - - PREDICTED: probable transcriptional regulator SLK2 [Jatropha curcas]
15 Hb_001999_090 0.0833238 - - PREDICTED: pentatricopeptide repeat-containing protein At2g29760, chloroplastic [Jatropha curcas]
16 Hb_002988_040 0.0845201642 - - -
17 Hb_000041_100 0.084978954 - - PREDICTED: zinc finger CCCH domain-containing protein 41 [Jatropha curcas]
18 Hb_000008_440 0.0850183615 - - PREDICTED: probable E3 ubiquitin-protein ligase LOG2 [Jatropha curcas]
19 Hb_005054_110 0.0861753851 - - PREDICTED: adenylosuccinate lyase-like [Jatropha curcas]
20 Hb_005686_090 0.0870970062 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 2 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000497_300 Hb_000497_300 Hb_010344_050 Hb_010344_050 Hb_000497_300--Hb_010344_050 Hb_004712_130 Hb_004712_130 Hb_000497_300--Hb_004712_130 Hb_001352_020 Hb_001352_020 Hb_000497_300--Hb_001352_020 Hb_000116_260 Hb_000116_260 Hb_000497_300--Hb_000116_260 Hb_164010_030 Hb_164010_030 Hb_000497_300--Hb_164010_030 Hb_001789_150 Hb_001789_150 Hb_000497_300--Hb_001789_150 Hb_010344_050--Hb_004712_130 Hb_010344_050--Hb_001352_020 Hb_007044_050 Hb_007044_050 Hb_010344_050--Hb_007044_050 Hb_007386_040 Hb_007386_040 Hb_010344_050--Hb_007386_040 Hb_000505_150 Hb_000505_150 Hb_010344_050--Hb_000505_150 Hb_001999_090 Hb_001999_090 Hb_004712_130--Hb_001999_090 Hb_027472_070 Hb_027472_070 Hb_004712_130--Hb_027472_070 Hb_000094_070 Hb_000094_070 Hb_004712_130--Hb_000094_070 Hb_000366_040 Hb_000366_040 Hb_004712_130--Hb_000366_040 Hb_001352_020--Hb_000116_260 Hb_000406_130 Hb_000406_130 Hb_001352_020--Hb_000406_130 Hb_001352_020--Hb_001789_150 Hb_000471_110 Hb_000471_110 Hb_001352_020--Hb_000471_110 Hb_007416_060 Hb_007416_060 Hb_000116_260--Hb_007416_060 Hb_000116_260--Hb_164010_030 Hb_000116_260--Hb_000471_110 Hb_000116_260--Hb_000406_130 Hb_001377_490 Hb_001377_490 Hb_164010_030--Hb_001377_490 Hb_001163_100 Hb_001163_100 Hb_164010_030--Hb_001163_100 Hb_000260_010 Hb_000260_010 Hb_164010_030--Hb_000260_010 Hb_001014_030 Hb_001014_030 Hb_164010_030--Hb_001014_030 Hb_000012_310 Hb_000012_310 Hb_001789_150--Hb_000012_310 Hb_000574_450 Hb_000574_450 Hb_001789_150--Hb_000574_450 Hb_010515_020 Hb_010515_020 Hb_001789_150--Hb_010515_020 Hb_004480_100 Hb_004480_100 Hb_001789_150--Hb_004480_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.14328 14.4732 8.36654 16.287 7.83725 12.4661
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.5173 14.7934 25.1 13.8234 20.5154

CAGE analysis