Hb_000471_110

Information

Type -
Description -
Location Contig471: 249554-251560
Sequence    

Annotation

kegg
ID rcu:RCOM_0853750
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012082721.1
description PREDICTED: pentatricopeptide repeat-containing protein At5g39980, chloroplastic [Jatropha curcas]
swissprot
ID Q9FLD8
description Pentatricopeptide repeat-containing protein At5g39980, chloroplastic OS=Arabidopsis thaliana GN=At5g39980 PE=2 SV=1
trembl
ID A0A067LAM2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09706 PE=4 SV=1
Gene Ontology
ID GO:0005739
description pentatricopeptide repeat-containing protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000471_110 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At5g39980, chloroplastic [Jatropha curcas]
2 Hb_000479_140 0.0603004071 - - TPA: hypothetical protein ZEAMMB73_881803, partial [Zea mays]
3 Hb_000406_130 0.0619863014 - - vesicle-associated membrane protein, putative [Ricinus communis]
4 Hb_000116_260 0.0682385996 - - PREDICTED: uncharacterized protein LOC105628572 [Jatropha curcas]
5 Hb_001352_020 0.0735983974 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 8, mitochondrial-like [Jatropha curcas]
6 Hb_000497_300 0.0808506333 - - peroxisomal membrane protein [Hevea brasiliensis]
7 Hb_164010_030 0.0854208525 - - PREDICTED: serine/threonine-protein kinase D6PK [Jatropha curcas]
8 Hb_010344_050 0.0872834702 - - Adagio 1 -like protein [Gossypium arboreum]
9 Hb_007416_060 0.0916764018 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 18 [Jatropha curcas]
10 Hb_008176_010 0.0960061207 - - PREDICTED: pentatricopeptide repeat-containing protein At4g20090 [Jatropha curcas]
11 Hb_002307_170 0.0995219826 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Jatropha curcas]
12 Hb_004712_130 0.1029957847 - - PREDICTED: uncharacterized protein LOC105633074 [Jatropha curcas]
13 Hb_003847_030 0.1035459518 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15010, mitochondrial [Jatropha curcas]
14 Hb_000913_020 0.1036068799 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
15 Hb_079312_010 0.1039474483 - - conserved hypothetical protein [Ricinus communis]
16 Hb_003376_250 0.1064044443 - - Transducin/WD40 repeat-like superfamily protein [Theobroma cacao]
17 Hb_000020_120 0.1065266459 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 8, mitochondrial-like [Jatropha curcas]
18 Hb_000010_340 0.1068821455 - - PREDICTED: pentatricopeptide repeat-containing protein At5g50280, chloroplastic [Jatropha curcas]
19 Hb_005488_200 0.1076605087 - - PREDICTED: uncharacterized protein LOC105632499 isoform X1 [Jatropha curcas]
20 Hb_001898_080 0.1099305566 - - PREDICTED: MACPF domain-containing protein At4g24290 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000471_110 Hb_000471_110 Hb_000479_140 Hb_000479_140 Hb_000471_110--Hb_000479_140 Hb_000406_130 Hb_000406_130 Hb_000471_110--Hb_000406_130 Hb_000116_260 Hb_000116_260 Hb_000471_110--Hb_000116_260 Hb_001352_020 Hb_001352_020 Hb_000471_110--Hb_001352_020 Hb_000497_300 Hb_000497_300 Hb_000471_110--Hb_000497_300 Hb_164010_030 Hb_164010_030 Hb_000471_110--Hb_164010_030 Hb_000479_140--Hb_000406_130 Hb_000020_120 Hb_000020_120 Hb_000479_140--Hb_000020_120 Hb_001242_130 Hb_001242_130 Hb_000479_140--Hb_001242_130 Hb_010344_050 Hb_010344_050 Hb_000479_140--Hb_010344_050 Hb_000479_140--Hb_000497_300 Hb_000406_130--Hb_001352_020 Hb_008176_010 Hb_008176_010 Hb_000406_130--Hb_008176_010 Hb_000406_130--Hb_000116_260 Hb_003376_250 Hb_003376_250 Hb_000406_130--Hb_003376_250 Hb_000116_260--Hb_001352_020 Hb_000116_260--Hb_000497_300 Hb_007416_060 Hb_007416_060 Hb_000116_260--Hb_007416_060 Hb_000116_260--Hb_164010_030 Hb_001352_020--Hb_000497_300 Hb_001789_150 Hb_001789_150 Hb_001352_020--Hb_001789_150 Hb_001352_020--Hb_010344_050 Hb_000497_300--Hb_010344_050 Hb_004712_130 Hb_004712_130 Hb_000497_300--Hb_004712_130 Hb_000497_300--Hb_164010_030 Hb_000497_300--Hb_001789_150 Hb_001377_490 Hb_001377_490 Hb_164010_030--Hb_001377_490 Hb_001163_100 Hb_001163_100 Hb_164010_030--Hb_001163_100 Hb_000260_010 Hb_000260_010 Hb_164010_030--Hb_000260_010 Hb_001014_030 Hb_001014_030 Hb_164010_030--Hb_001014_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.11658 2.63423 1.01588 4.23642 1.94682 3.08265
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.74269 4.54602 7.07835 3.51857 5.49584

CAGE analysis