Hb_000479_140

Information

Type -
Description -
Location Contig479: 83042-87003
Sequence    

Annotation

kegg
ID -
description -
nr
ID DAA47197.1
description TPA: hypothetical protein ZEAMMB73_881803, partial [Zea mays]
swissprot
ID -
description -
trembl
ID A0A096U9Y7
description Uncharacterized protein OS=Zea mays PE=4 SV=1
Gene Ontology
ID GO:0000139
description probable galacturonosyltransferase 14 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44614: 83742-84066 , PASA_asmbl_44616: 82715-83365 , PASA_asmbl_44618: 82715-107275
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000479_140 0.0 - - TPA: hypothetical protein ZEAMMB73_881803, partial [Zea mays]
2 Hb_000471_110 0.0603004071 - - PREDICTED: pentatricopeptide repeat-containing protein At5g39980, chloroplastic [Jatropha curcas]
3 Hb_000406_130 0.0745951744 - - vesicle-associated membrane protein, putative [Ricinus communis]
4 Hb_000020_120 0.0818728255 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 8, mitochondrial-like [Jatropha curcas]
5 Hb_001242_130 0.085727598 - - PREDICTED: U3 small nucleolar RNA-associated protein 4-like [Jatropha curcas]
6 Hb_010344_050 0.0904151271 - - Adagio 1 -like protein [Gossypium arboreum]
7 Hb_000497_300 0.0907696888 - - peroxisomal membrane protein [Hevea brasiliensis]
8 Hb_000116_260 0.0910572156 - - PREDICTED: uncharacterized protein LOC105628572 [Jatropha curcas]
9 Hb_002307_170 0.0912782556 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Jatropha curcas]
10 Hb_004712_130 0.0912820113 - - PREDICTED: uncharacterized protein LOC105633074 [Jatropha curcas]
11 Hb_001352_020 0.0943158566 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 8, mitochondrial-like [Jatropha curcas]
12 Hb_007416_060 0.0943463907 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 18 [Jatropha curcas]
13 Hb_079312_010 0.1052329866 - - conserved hypothetical protein [Ricinus communis]
14 Hb_008176_010 0.108331458 - - PREDICTED: pentatricopeptide repeat-containing protein At4g20090 [Jatropha curcas]
15 Hb_003847_030 0.1088757661 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15010, mitochondrial [Jatropha curcas]
16 Hb_002988_040 0.1095956734 - - -
17 Hb_164010_030 0.1106746141 - - PREDICTED: serine/threonine-protein kinase D6PK [Jatropha curcas]
18 Hb_003376_250 0.1113628306 - - Transducin/WD40 repeat-like superfamily protein [Theobroma cacao]
19 Hb_001999_090 0.1114302864 - - PREDICTED: pentatricopeptide repeat-containing protein At2g29760, chloroplastic [Jatropha curcas]
20 Hb_007044_050 0.1114476432 - - PREDICTED: putative endo-1,3(4)-beta-glucanase 2 [Jatropha curcas]

Gene co-expression network

sample Hb_000479_140 Hb_000479_140 Hb_000471_110 Hb_000471_110 Hb_000479_140--Hb_000471_110 Hb_000406_130 Hb_000406_130 Hb_000479_140--Hb_000406_130 Hb_000020_120 Hb_000020_120 Hb_000479_140--Hb_000020_120 Hb_001242_130 Hb_001242_130 Hb_000479_140--Hb_001242_130 Hb_010344_050 Hb_010344_050 Hb_000479_140--Hb_010344_050 Hb_000497_300 Hb_000497_300 Hb_000479_140--Hb_000497_300 Hb_000471_110--Hb_000406_130 Hb_000116_260 Hb_000116_260 Hb_000471_110--Hb_000116_260 Hb_001352_020 Hb_001352_020 Hb_000471_110--Hb_001352_020 Hb_000471_110--Hb_000497_300 Hb_164010_030 Hb_164010_030 Hb_000471_110--Hb_164010_030 Hb_000406_130--Hb_001352_020 Hb_008176_010 Hb_008176_010 Hb_000406_130--Hb_008176_010 Hb_000406_130--Hb_000116_260 Hb_003376_250 Hb_003376_250 Hb_000406_130--Hb_003376_250 Hb_042202_030 Hb_042202_030 Hb_000020_120--Hb_042202_030 Hb_000020_120--Hb_000406_130 Hb_007416_060 Hb_007416_060 Hb_000020_120--Hb_007416_060 Hb_008725_170 Hb_008725_170 Hb_000020_120--Hb_008725_170 Hb_000020_120--Hb_003376_250 Hb_012725_060 Hb_012725_060 Hb_001242_130--Hb_012725_060 Hb_027472_070 Hb_027472_070 Hb_001242_130--Hb_027472_070 Hb_004712_130 Hb_004712_130 Hb_001242_130--Hb_004712_130 Hb_001242_130--Hb_000497_300 Hb_001242_130--Hb_001352_020 Hb_010344_050--Hb_000497_300 Hb_010344_050--Hb_004712_130 Hb_010344_050--Hb_001352_020 Hb_007044_050 Hb_007044_050 Hb_010344_050--Hb_007044_050 Hb_007386_040 Hb_007386_040 Hb_010344_050--Hb_007386_040 Hb_000505_150 Hb_000505_150 Hb_010344_050--Hb_000505_150 Hb_000497_300--Hb_004712_130 Hb_000497_300--Hb_001352_020 Hb_000497_300--Hb_000116_260 Hb_000497_300--Hb_164010_030 Hb_001789_150 Hb_001789_150 Hb_000497_300--Hb_001789_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.83396 2.05126 1.08766 2.59413 1.15595 2.39722
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.063 3.69239 5.75096 3.41646 4.98192

CAGE analysis