Hb_012725_060

Information

Type -
Description -
Location Contig12725: 71190-85834
Sequence    

Annotation

kegg
ID rcu:RCOM_0666070
description protein binding protein, putative
nr
ID XP_002528672.1
description protein binding protein, putative [Ricinus communis]
swissprot
ID Q9SIZ8
description E3 ubiquitin-protein ligase RKP OS=Arabidopsis thaliana GN=RKP PE=2 SV=2
trembl
ID B9SRQ3
description Protein binding protein, putative OS=Ricinus communis GN=RCOM_0666070 PE=4 SV=1
Gene Ontology
ID GO:0000151
description e3 ubiquitin-protein ligase rkp

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08329: 72864-75571 , PASA_asmbl_08331: 72869-75155 , PASA_asmbl_08332: 75615-79607 , PASA_asmbl_08333: 79849-85911
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012725_060 0.0 - - protein binding protein, putative [Ricinus communis]
2 Hb_001242_130 0.0599542536 - - PREDICTED: U3 small nucleolar RNA-associated protein 4-like [Jatropha curcas]
3 Hb_027472_070 0.0627285327 - - PREDICTED: uncharacterized protein LOC105646172 [Jatropha curcas]
4 Hb_000417_200 0.077608591 - - PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein DOT4, chloroplastic [Jatropha curcas]
5 Hb_001865_070 0.0815832057 - - PREDICTED: uncharacterized protein LOC105647937 isoform X1 [Jatropha curcas]
6 Hb_001405_070 0.0840512177 - - PREDICTED: pentatricopeptide repeat-containing protein At3g23020 [Jatropha curcas]
7 Hb_002235_040 0.0854456602 - - PREDICTED: pentatricopeptide repeat-containing protein At3g29230 [Jatropha curcas]
8 Hb_002686_090 0.0894338814 - - PREDICTED: pentatricopeptide repeat-containing protein At4g13650 [Jatropha curcas]
9 Hb_004712_130 0.0959211092 - - PREDICTED: uncharacterized protein LOC105633074 [Jatropha curcas]
10 Hb_001999_090 0.0964623066 - - PREDICTED: pentatricopeptide repeat-containing protein At2g29760, chloroplastic [Jatropha curcas]
11 Hb_000204_120 0.0964963259 - - PREDICTED: uncharacterized protein LOC105639239 [Jatropha curcas]
12 Hb_066920_030 0.0974008818 - - PREDICTED: adagio protein 1 [Jatropha curcas]
13 Hb_000497_300 0.0974962676 - - peroxisomal membrane protein [Hevea brasiliensis]
14 Hb_001716_040 0.1014656326 - - ribonuclease p/mrp subunit, putative [Ricinus communis]
15 Hb_001352_020 0.1016591441 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 8, mitochondrial-like [Jatropha curcas]
16 Hb_011671_410 0.1025763381 transcription factor TF Family: SET histone-lysine n-methyltransferase, suvh, putative [Ricinus communis]
17 Hb_062226_070 0.1033037911 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 4 isoform X1 [Jatropha curcas]
18 Hb_000635_060 0.1034558047 - - PREDICTED: uncharacterized protein LOC105644797 [Jatropha curcas]
19 Hb_000366_040 0.1069046013 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]
20 Hb_000640_040 0.1073061891 - - PREDICTED: bromodomain and WD repeat-containing protein 1 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_012725_060 Hb_012725_060 Hb_001242_130 Hb_001242_130 Hb_012725_060--Hb_001242_130 Hb_027472_070 Hb_027472_070 Hb_012725_060--Hb_027472_070 Hb_000417_200 Hb_000417_200 Hb_012725_060--Hb_000417_200 Hb_001865_070 Hb_001865_070 Hb_012725_060--Hb_001865_070 Hb_001405_070 Hb_001405_070 Hb_012725_060--Hb_001405_070 Hb_002235_040 Hb_002235_040 Hb_012725_060--Hb_002235_040 Hb_001242_130--Hb_027472_070 Hb_004712_130 Hb_004712_130 Hb_001242_130--Hb_004712_130 Hb_000479_140 Hb_000479_140 Hb_001242_130--Hb_000479_140 Hb_000497_300 Hb_000497_300 Hb_001242_130--Hb_000497_300 Hb_001352_020 Hb_001352_020 Hb_001242_130--Hb_001352_020 Hb_006816_280 Hb_006816_280 Hb_027472_070--Hb_006816_280 Hb_027472_070--Hb_004712_130 Hb_001999_090 Hb_001999_090 Hb_027472_070--Hb_001999_090 Hb_004787_050 Hb_004787_050 Hb_027472_070--Hb_004787_050 Hb_000417_200--Hb_001405_070 Hb_000417_200--Hb_002235_040 Hb_000170_130 Hb_000170_130 Hb_000417_200--Hb_000170_130 Hb_002686_090 Hb_002686_090 Hb_000417_200--Hb_002686_090 Hb_000417_200--Hb_001242_130 Hb_001865_070--Hb_002686_090 Hb_007441_160 Hb_007441_160 Hb_001865_070--Hb_007441_160 Hb_005977_070 Hb_005977_070 Hb_001865_070--Hb_005977_070 Hb_000672_040 Hb_000672_040 Hb_001865_070--Hb_000672_040 Hb_005736_020 Hb_005736_020 Hb_001865_070--Hb_005736_020 Hb_001157_240 Hb_001157_240 Hb_001865_070--Hb_001157_240 Hb_011671_410 Hb_011671_410 Hb_001405_070--Hb_011671_410 Hb_000230_500 Hb_000230_500 Hb_001405_070--Hb_000230_500 Hb_002542_110 Hb_002542_110 Hb_001405_070--Hb_002542_110 Hb_001405_070--Hb_000170_130 Hb_002235_040--Hb_001999_090 Hb_007441_220 Hb_007441_220 Hb_002235_040--Hb_007441_220 Hb_002316_150 Hb_002316_150 Hb_002235_040--Hb_002316_150 Hb_002316_160 Hb_002316_160 Hb_002235_040--Hb_002316_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.23141 10.5879 4.63182 6.67201 5.07281 6.42289
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.30413 7.76585 13.1903 10.6496 13.1948

CAGE analysis