Hb_002316_150

Information

Type transcription factor
Description TF Family: IWS1
Location Contig2316: 94471-101677
Sequence    

Annotation

kegg
ID rcu:RCOM_1511900
description DNA binding protein, putative
nr
ID XP_012080115.1
description PREDICTED: uncharacterized protein LOC105640420 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9RB66
description DNA binding protein, putative OS=Ricinus communis GN=RCOM_1511900 PE=4 SV=1
Gene Ontology
ID GO:0005634
description bah helical bundle-like domain isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24376: 94466-101594 , PASA_asmbl_24377: 99906-101588
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002316_150 0.0 transcription factor TF Family: IWS1 PREDICTED: uncharacterized protein LOC105640420 [Jatropha curcas]
2 Hb_006718_020 0.0608381503 - - PREDICTED: uncharacterized protein LOC105649330 isoform X2 [Jatropha curcas]
3 Hb_000270_670 0.0618735717 transcription factor TF Family: IWS1 PREDICTED: uncharacterized protein LOC105640420 [Jatropha curcas]
4 Hb_007441_220 0.0656860392 - - PREDICTED: eukaryotic translation initiation factor 4G [Jatropha curcas]
5 Hb_000866_120 0.0673539583 - - PREDICTED: mediator of RNA polymerase II transcription subunit 12 [Jatropha curcas]
6 Hb_000172_110 0.0764227319 - - -
7 Hb_000140_230 0.0771798907 - - PREDICTED: pentatricopeptide repeat-containing protein At3g61520, mitochondrial-like [Jatropha curcas]
8 Hb_002235_040 0.0792174898 - - PREDICTED: pentatricopeptide repeat-containing protein At3g29230 [Jatropha curcas]
9 Hb_000603_110 0.0803944048 - - copper transporter, putative [Ricinus communis]
10 Hb_001085_060 0.0824578906 - - PREDICTED: pentatricopeptide repeat-containing protein At1g04840 [Jatropha curcas]
11 Hb_001999_090 0.0839746766 - - PREDICTED: pentatricopeptide repeat-containing protein At2g29760, chloroplastic [Jatropha curcas]
12 Hb_002316_160 0.0858119844 transcription factor TF Family: IWS1 PREDICTED: uncharacterized protein LOC105640422 [Jatropha curcas]
13 Hb_000130_490 0.0862388078 - - PREDICTED: uncharacterized protein LOC105637408 isoform X2 [Jatropha curcas]
14 Hb_000890_050 0.0863085047 - - PREDICTED: uncharacterized protein LOC105631800 [Jatropha curcas]
15 Hb_000041_100 0.0864125838 - - PREDICTED: zinc finger CCCH domain-containing protein 41 [Jatropha curcas]
16 Hb_000230_500 0.0904452012 - - PREDICTED: pentatricopeptide repeat-containing protein At5g19020, mitochondrial [Jatropha curcas]
17 Hb_000676_010 0.0919897564 - - PREDICTED: pentatricopeptide repeat-containing protein At1g20230-like [Jatropha curcas]
18 Hb_002007_160 0.0923493191 - - PREDICTED: uncharacterized protein LOC105647522 [Jatropha curcas]
19 Hb_002063_020 0.0937712243 - - PREDICTED: pentatricopeptide repeat-containing protein At2g17140 [Jatropha curcas]
20 Hb_012490_090 0.0945405717 - - PREDICTED: myosin-17 [Jatropha curcas]

Gene co-expression network

sample Hb_002316_150 Hb_002316_150 Hb_006718_020 Hb_006718_020 Hb_002316_150--Hb_006718_020 Hb_000270_670 Hb_000270_670 Hb_002316_150--Hb_000270_670 Hb_007441_220 Hb_007441_220 Hb_002316_150--Hb_007441_220 Hb_000866_120 Hb_000866_120 Hb_002316_150--Hb_000866_120 Hb_000172_110 Hb_000172_110 Hb_002316_150--Hb_000172_110 Hb_000140_230 Hb_000140_230 Hb_002316_150--Hb_000140_230 Hb_001999_090 Hb_001999_090 Hb_006718_020--Hb_001999_090 Hb_006718_020--Hb_000270_670 Hb_002316_160 Hb_002316_160 Hb_006718_020--Hb_002316_160 Hb_000130_490 Hb_000130_490 Hb_006718_020--Hb_000130_490 Hb_006718_020--Hb_007441_220 Hb_000270_670--Hb_000172_110 Hb_000270_670--Hb_007441_220 Hb_000270_670--Hb_000866_120 Hb_000890_050 Hb_000890_050 Hb_000270_670--Hb_000890_050 Hb_004143_130 Hb_004143_130 Hb_000270_670--Hb_004143_130 Hb_000041_100 Hb_000041_100 Hb_007441_220--Hb_000041_100 Hb_001085_060 Hb_001085_060 Hb_007441_220--Hb_001085_060 Hb_007441_220--Hb_001999_090 Hb_000245_040 Hb_000245_040 Hb_007441_220--Hb_000245_040 Hb_002007_160 Hb_002007_160 Hb_000866_120--Hb_002007_160 Hb_000866_120--Hb_000172_110 Hb_002798_070 Hb_002798_070 Hb_000866_120--Hb_002798_070 Hb_000866_120--Hb_000890_050 Hb_000172_110--Hb_000130_490 Hb_000230_500 Hb_000230_500 Hb_000172_110--Hb_000230_500 Hb_000172_110--Hb_001999_090 Hb_000264_320 Hb_000264_320 Hb_000140_230--Hb_000264_320 Hb_003020_050 Hb_003020_050 Hb_000140_230--Hb_003020_050 Hb_168697_010 Hb_168697_010 Hb_000140_230--Hb_168697_010 Hb_008775_040 Hb_008775_040 Hb_000140_230--Hb_008775_040 Hb_048219_010 Hb_048219_010 Hb_000140_230--Hb_048219_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.2307 32.5734 11.0849 11.924 19.1559 19.831
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.6347 19.6299 40.4783 20.4015 25.519

CAGE analysis