Hb_002007_160

Information

Type -
Description -
Location Contig2007: 97537-102856
Sequence    

Annotation

kegg
ID rcu:RCOM_1432470
description hypothetical protein
nr
ID XP_012089035.1
description PREDICTED: uncharacterized protein LOC105647522 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9RF88
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1432470 PE=4 SV=1
Gene Ontology
ID GO:0003677
description arginine-glutamic acid dipeptide repeats

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20373: 97801-98092 , PASA_asmbl_20374: 98110-98520 , PASA_asmbl_20375: 98529-98740 , PASA_asmbl_20376: 98968-99367
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002007_160 0.0 - - PREDICTED: uncharacterized protein LOC105647522 [Jatropha curcas]
2 Hb_000866_120 0.0561875748 - - PREDICTED: mediator of RNA polymerase II transcription subunit 12 [Jatropha curcas]
3 Hb_000599_190 0.0662133205 transcription factor TF Family: SNF2 DNA repair and recombination protein RAD26, putative [Ricinus communis]
4 Hb_029142_050 0.0735276353 desease resistance Gene Name: PPR PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
5 Hb_002780_010 0.0737927708 - - PREDICTED: uncharacterized protein LOC105639237 [Jatropha curcas]
6 Hb_010222_070 0.0747371056 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like isoform X2 [Jatropha curcas]
7 Hb_002798_070 0.077734422 transcription factor TF Family: Jumonji PREDICTED: putative lysine-specific demethylase JMJ16 [Jatropha curcas]
8 Hb_009767_080 0.0786421982 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105631983 [Jatropha curcas]
9 Hb_000025_280 0.0787550506 transcription factor TF Family: C3H hypothetical protein JCGZ_07432 [Jatropha curcas]
10 Hb_004705_020 0.0796175958 - - PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 3 [Jatropha curcas]
11 Hb_001268_380 0.0828537118 - - PREDICTED: pentatricopeptide repeat-containing protein At5g14080-like [Jatropha curcas]
12 Hb_001629_060 0.0837835571 transcription factor TF Family: SWI/SNF-SWI3 Flavin-containing amine oxidase domain-containing protein, putative [Ricinus communis]
13 Hb_000017_220 0.0849263391 - - PREDICTED: uncharacterized protein LOC105645768 [Jatropha curcas]
14 Hb_000317_370 0.0860615745 transcription factor TF Family: PHD PREDICTED: PHD finger protein At1g33420-like [Jatropha curcas]
15 Hb_000024_040 0.0863105637 - - PREDICTED: ALG-2 interacting protein X [Jatropha curcas]
16 Hb_001488_180 0.0863841143 - - PREDICTED: uncharacterized protein LOC105644152 isoform X1 [Jatropha curcas]
17 Hb_001104_190 0.0879153781 - - PREDICTED: uncharacterized protein LOC105629451 [Jatropha curcas]
18 Hb_000964_130 0.0882486518 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 30-like [Jatropha curcas]
19 Hb_003768_050 0.0901184426 - - PREDICTED: uncharacterized protein LOC105644152 isoform X1 [Jatropha curcas]
20 Hb_000392_150 0.0901358936 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g74580 [Jatropha curcas]

Gene co-expression network

sample Hb_002007_160 Hb_002007_160 Hb_000866_120 Hb_000866_120 Hb_002007_160--Hb_000866_120 Hb_000599_190 Hb_000599_190 Hb_002007_160--Hb_000599_190 Hb_029142_050 Hb_029142_050 Hb_002007_160--Hb_029142_050 Hb_002780_010 Hb_002780_010 Hb_002007_160--Hb_002780_010 Hb_010222_070 Hb_010222_070 Hb_002007_160--Hb_010222_070 Hb_002798_070 Hb_002798_070 Hb_002007_160--Hb_002798_070 Hb_000172_110 Hb_000172_110 Hb_000866_120--Hb_000172_110 Hb_000270_670 Hb_000270_670 Hb_000866_120--Hb_000270_670 Hb_002316_150 Hb_002316_150 Hb_000866_120--Hb_002316_150 Hb_000866_120--Hb_002798_070 Hb_000890_050 Hb_000890_050 Hb_000866_120--Hb_000890_050 Hb_145022_010 Hb_145022_010 Hb_000599_190--Hb_145022_010 Hb_001104_190 Hb_001104_190 Hb_000599_190--Hb_001104_190 Hb_004705_020 Hb_004705_020 Hb_000599_190--Hb_004705_020 Hb_001217_050 Hb_001217_050 Hb_000599_190--Hb_001217_050 Hb_009767_080 Hb_009767_080 Hb_000599_190--Hb_009767_080 Hb_001268_380 Hb_001268_380 Hb_029142_050--Hb_001268_380 Hb_000392_150 Hb_000392_150 Hb_029142_050--Hb_000392_150 Hb_029142_050--Hb_000866_120 Hb_000046_580 Hb_000046_580 Hb_029142_050--Hb_000046_580 Hb_000003_550 Hb_000003_550 Hb_029142_050--Hb_000003_550 Hb_009898_010 Hb_009898_010 Hb_002780_010--Hb_009898_010 Hb_002780_010--Hb_009767_080 Hb_000321_150 Hb_000321_150 Hb_002780_010--Hb_000321_150 Hb_000260_070 Hb_000260_070 Hb_002780_010--Hb_000260_070 Hb_002780_010--Hb_001268_380 Hb_003768_050 Hb_003768_050 Hb_010222_070--Hb_003768_050 Hb_000024_040 Hb_000024_040 Hb_010222_070--Hb_000024_040 Hb_010222_070--Hb_001217_050 Hb_000347_390 Hb_000347_390 Hb_010222_070--Hb_000347_390 Hb_002234_090 Hb_002234_090 Hb_010222_070--Hb_002234_090 Hb_012779_090 Hb_012779_090 Hb_002798_070--Hb_012779_090 Hb_000243_250 Hb_000243_250 Hb_002798_070--Hb_000243_250 Hb_002818_030 Hb_002818_030 Hb_002798_070--Hb_002818_030 Hb_002783_040 Hb_002783_040 Hb_002798_070--Hb_002783_040 Hb_162275_050 Hb_162275_050 Hb_002798_070--Hb_162275_050 Hb_000442_010 Hb_000442_010 Hb_002798_070--Hb_000442_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.12018 2.54457 0.687793 0.860822 0.898475 0.988386
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.733643 0.951525 1.65824 1.3819 1.37015

CAGE analysis