Hb_000599_190

Information

Type transcription factor
Description TF Family: SNF2
Location Contig599: 166880-174287
Sequence    

Annotation

kegg
ID rcu:RCOM_0260090
description DNA repair and recombination protein RAD26, putative (EC:2.7.11.1)
nr
ID XP_002529848.1
description DNA repair and recombination protein RAD26, putative [Ricinus communis]
swissprot
ID Q9ZV43
description Protein CHROMATIN REMODELING 8 OS=Arabidopsis thaliana GN=CHR8 PE=2 SV=1
trembl
ID B9SV29
description DNA repair and recombination protein RAD26, putative OS=Ricinus communis GN=RCOM_0260090 PE=4 SV=1
Gene Ontology
ID GO:0005524
description protein chromatin remodeling 8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50469: 166956-168243 , PASA_asmbl_50470: 168357-169921 , PASA_asmbl_50471: 169949-170311 , PASA_asmbl_50473: 170685-171871 , PASA_asmbl_50474: 170685-171905 , PASA_asmbl_50475: 172060-174297 , PASA_asmbl_50476: 173625-173814
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000599_190 0.0 transcription factor TF Family: SNF2 DNA repair and recombination protein RAD26, putative [Ricinus communis]
2 Hb_002007_160 0.0662133205 - - PREDICTED: uncharacterized protein LOC105647522 [Jatropha curcas]
3 Hb_145022_010 0.0673390753 - - hypothetical protein JCGZ_22699 [Jatropha curcas]
4 Hb_001104_190 0.0721735457 - - PREDICTED: uncharacterized protein LOC105629451 [Jatropha curcas]
5 Hb_004705_020 0.0754103979 - - PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 3 [Jatropha curcas]
6 Hb_001217_050 0.0797106077 - - actin binding protein, putative [Ricinus communis]
7 Hb_009767_080 0.0814009692 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105631983 [Jatropha curcas]
8 Hb_000069_470 0.082057925 - - PREDICTED: uncharacterized protein LOC105642863 isoform X1 [Jatropha curcas]
9 Hb_008053_040 0.0831935401 - - PREDICTED: mediator of RNA polymerase II transcription subunit 12-like [Pyrus x bretschneideri]
10 Hb_002780_010 0.0835772044 - - PREDICTED: uncharacterized protein LOC105639237 [Jatropha curcas]
11 Hb_000672_040 0.084267929 - - PREDICTED: ENHANCER OF AG-4 protein 2 [Jatropha curcas]
12 Hb_001628_070 0.0848658798 - - hect ubiquitin-protein ligase, putative [Ricinus communis]
13 Hb_000017_220 0.0856376601 - - PREDICTED: uncharacterized protein LOC105645768 [Jatropha curcas]
14 Hb_001488_180 0.086716251 - - PREDICTED: uncharacterized protein LOC105644152 isoform X1 [Jatropha curcas]
15 Hb_010222_070 0.0867946226 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like isoform X2 [Jatropha curcas]
16 Hb_004970_170 0.0869557198 transcription factor TF Family: bZIP PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 5 [Jatropha curcas]
17 Hb_062226_070 0.0873106845 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 4 isoform X1 [Jatropha curcas]
18 Hb_000321_150 0.0893342541 - - PREDICTED: uncharacterized protein LOC105645596 isoform X1 [Jatropha curcas]
19 Hb_005186_040 0.089513895 - - PREDICTED: mediator of RNA polymerase II transcription subunit 13 isoform X2 [Jatropha curcas]
20 Hb_003768_050 0.0903467098 - - PREDICTED: uncharacterized protein LOC105644152 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000599_190 Hb_000599_190 Hb_002007_160 Hb_002007_160 Hb_000599_190--Hb_002007_160 Hb_145022_010 Hb_145022_010 Hb_000599_190--Hb_145022_010 Hb_001104_190 Hb_001104_190 Hb_000599_190--Hb_001104_190 Hb_004705_020 Hb_004705_020 Hb_000599_190--Hb_004705_020 Hb_001217_050 Hb_001217_050 Hb_000599_190--Hb_001217_050 Hb_009767_080 Hb_009767_080 Hb_000599_190--Hb_009767_080 Hb_000866_120 Hb_000866_120 Hb_002007_160--Hb_000866_120 Hb_029142_050 Hb_029142_050 Hb_002007_160--Hb_029142_050 Hb_002780_010 Hb_002780_010 Hb_002007_160--Hb_002780_010 Hb_010222_070 Hb_010222_070 Hb_002007_160--Hb_010222_070 Hb_002798_070 Hb_002798_070 Hb_002007_160--Hb_002798_070 Hb_000922_250 Hb_000922_250 Hb_145022_010--Hb_000922_250 Hb_000471_140 Hb_000471_140 Hb_145022_010--Hb_000471_140 Hb_001488_180 Hb_001488_180 Hb_145022_010--Hb_001488_180 Hb_005186_040 Hb_005186_040 Hb_145022_010--Hb_005186_040 Hb_145022_010--Hb_002007_160 Hb_006117_080 Hb_006117_080 Hb_001104_190--Hb_006117_080 Hb_000069_470 Hb_000069_470 Hb_001104_190--Hb_000069_470 Hb_003470_080 Hb_003470_080 Hb_001104_190--Hb_003470_080 Hb_000321_150 Hb_000321_150 Hb_001104_190--Hb_000321_150 Hb_001080_230 Hb_001080_230 Hb_001104_190--Hb_001080_230 Hb_001628_070 Hb_001628_070 Hb_004705_020--Hb_001628_070 Hb_006531_020 Hb_006531_020 Hb_004705_020--Hb_006531_020 Hb_000017_220 Hb_000017_220 Hb_004705_020--Hb_000017_220 Hb_000024_040 Hb_000024_040 Hb_004705_020--Hb_000024_040 Hb_000025_280 Hb_000025_280 Hb_004705_020--Hb_000025_280 Hb_005977_070 Hb_005977_070 Hb_004705_020--Hb_005977_070 Hb_000107_490 Hb_000107_490 Hb_001217_050--Hb_000107_490 Hb_000313_120 Hb_000313_120 Hb_001217_050--Hb_000313_120 Hb_001217_050--Hb_010222_070 Hb_000245_040 Hb_000245_040 Hb_001217_050--Hb_000245_040 Hb_004030_080 Hb_004030_080 Hb_001217_050--Hb_004030_080 Hb_019430_020 Hb_019430_020 Hb_009767_080--Hb_019430_020 Hb_000890_050 Hb_000890_050 Hb_009767_080--Hb_000890_050 Hb_000684_250 Hb_000684_250 Hb_009767_080--Hb_000684_250 Hb_009898_010 Hb_009898_010 Hb_009767_080--Hb_009898_010 Hb_009767_080--Hb_000321_150 Hb_009767_080--Hb_000069_470
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.88076 12.4384 3.04834 4.87068 5.20256 6.36903
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.67521 5.45402 7.14458 7.36338 7.84804

CAGE analysis