Hb_006531_020

Information

Type -
Description -
Location Contig6531: 18833-26074
Sequence    

Annotation

kegg
ID pop:POPTR_0001s31730g
description POPTRDRAFT_752918; hypothetical protein
nr
ID XP_012086052.1
description PREDICTED: autophagy-related protein 13 [Jatropha curcas]
swissprot
ID Q6BQ20
description Autophagy-related protein 13 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=ATG13 PE=3 SV=2
trembl
ID A0A067K2U5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22215 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52598: 19010-25983 , PASA_asmbl_52599: 21774-21916
cDNA
(Sanger)
(ID:Location)		 034_B13.ab1: 24723-25983

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006531_020 0.0 - - PREDICTED: autophagy-related protein 13 [Jatropha curcas]
2 Hb_001628_070 0.0567415481 - - hect ubiquitin-protein ligase, putative [Ricinus communis]
3 Hb_001951_170 0.0568318404 - - PREDICTED: uncharacterized protein LOC105649755 [Jatropha curcas]
4 Hb_000331_580 0.0572510717 - - PREDICTED: programmed cell death protein 4-like [Jatropha curcas]
5 Hb_000009_410 0.0579371892 transcription factor TF Family: SET hypothetical protein POPTR_0007s12130g [Populus trichocarpa]
6 Hb_004705_020 0.0641116739 - - PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 3 [Jatropha curcas]
7 Hb_123531_010 0.0661615448 - - PREDICTED: nuclear pore complex protein NUP98A isoform X1 [Jatropha curcas]
8 Hb_006031_010 0.0674882585 - - PREDICTED: transcription initiation factor TFIID subunit 15b isoform X3 [Jatropha curcas]
9 Hb_005408_030 0.0702760867 - - PREDICTED: uncharacterized protein LOC105648043 [Jatropha curcas]
10 Hb_000934_210 0.0715761033 - - suppressor of ty, putative [Ricinus communis]
11 Hb_000003_100 0.0717811075 transcription factor TF Family: SNF2 PREDICTED: transcription termination factor 2 isoform X5 [Jatropha curcas]
12 Hb_003216_090 0.0719089705 - - PREDICTED: nuclear pore complex protein NUP133 isoform X1 [Jatropha curcas]
13 Hb_000024_040 0.072453316 - - PREDICTED: ALG-2 interacting protein X [Jatropha curcas]
14 Hb_005186_040 0.0740981879 - - PREDICTED: mediator of RNA polymerase II transcription subunit 13 isoform X2 [Jatropha curcas]
15 Hb_001167_050 0.0757723567 - - PREDICTED: uncharacterized protein LOC105648014 [Jatropha curcas]
16 Hb_000574_530 0.0767260477 - - PREDICTED: pre-mRNA-processing-splicing factor 8 [Jatropha curcas]
17 Hb_004208_050 0.076998411 desease resistance Gene Name: CDC48_N cell division cycle protein 48 [Hevea brasiliensis]
18 Hb_009486_090 0.0779349474 - - RNA binding protein, putative [Ricinus communis]
19 Hb_002889_020 0.0780129607 - - PREDICTED: mitogen-activated protein kinase kinase 3 [Jatropha curcas]
20 Hb_007441_160 0.0781932706 - - RNA binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_006531_020 Hb_006531_020 Hb_001628_070 Hb_001628_070 Hb_006531_020--Hb_001628_070 Hb_001951_170 Hb_001951_170 Hb_006531_020--Hb_001951_170 Hb_000331_580 Hb_000331_580 Hb_006531_020--Hb_000331_580 Hb_000009_410 Hb_000009_410 Hb_006531_020--Hb_000009_410 Hb_004705_020 Hb_004705_020 Hb_006531_020--Hb_004705_020 Hb_123531_010 Hb_123531_010 Hb_006531_020--Hb_123531_010 Hb_001628_070--Hb_004705_020 Hb_004586_290 Hb_004586_290 Hb_001628_070--Hb_004586_290 Hb_000003_100 Hb_000003_100 Hb_001628_070--Hb_000003_100 Hb_000024_040 Hb_000024_040 Hb_001628_070--Hb_000024_040 Hb_000412_010 Hb_000412_010 Hb_001628_070--Hb_000412_010 Hb_003216_090 Hb_003216_090 Hb_001951_170--Hb_003216_090 Hb_005832_010 Hb_005832_010 Hb_001951_170--Hb_005832_010 Hb_006031_010 Hb_006031_010 Hb_001951_170--Hb_006031_010 Hb_002007_110 Hb_002007_110 Hb_001951_170--Hb_002007_110 Hb_001951_170--Hb_000331_580 Hb_000008_240 Hb_000008_240 Hb_000331_580--Hb_000008_240 Hb_000331_580--Hb_000003_100 Hb_005568_040 Hb_005568_040 Hb_000331_580--Hb_005568_040 Hb_000331_580--Hb_002007_110 Hb_000331_580--Hb_123531_010 Hb_005408_030 Hb_005408_030 Hb_000009_410--Hb_005408_030 Hb_000934_210 Hb_000934_210 Hb_000009_410--Hb_000934_210 Hb_000009_410--Hb_001951_170 Hb_011021_050 Hb_011021_050 Hb_000009_410--Hb_011021_050 Hb_000009_410--Hb_006031_010 Hb_000017_220 Hb_000017_220 Hb_004705_020--Hb_000017_220 Hb_004705_020--Hb_000024_040 Hb_000025_280 Hb_000025_280 Hb_004705_020--Hb_000025_280 Hb_005977_070 Hb_005977_070 Hb_004705_020--Hb_005977_070 Hb_123531_010--Hb_002007_110 Hb_007245_020 Hb_007245_020 Hb_123531_010--Hb_007245_020 Hb_123531_010--Hb_000934_210 Hb_002357_070 Hb_002357_070 Hb_123531_010--Hb_002357_070 Hb_000172_340 Hb_000172_340 Hb_123531_010--Hb_000172_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.21096 10.5288 4.04696 5.65043 4.50539 4.60771
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.68988 2.797 4.3962 8.75619 7.73576

CAGE analysis