Hb_004586_290

Information

Type -
Description -
Location Contig4586: 334992-339735
Sequence    

Annotation

kegg
ID pop:POPTR_0005s17580g
description POPTRDRAFT_831460; F-box family protein
nr
ID XP_012067953.1
description PREDICTED: transport inhibitor response 1-like protein [Jatropha curcas]
swissprot
ID Q9LTX2
description Transport inhibitor response 1-like protein OS=Arabidopsis thaliana GN=At5g49980 PE=2 SV=1
trembl
ID A0A067LAB6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15857 PE=4 SV=1
Gene Ontology
ID GO:0000822
description transport inhibitor response 1-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43559: 334650-334797 , PASA_asmbl_43561: 335075-337962 , PASA_asmbl_43562: 337986-338278
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004586_290 0.0 - - PREDICTED: transport inhibitor response 1-like protein [Jatropha curcas]
2 Hb_005568_040 0.0565737843 - - PREDICTED: uncharacterized protein LOC105628163 isoform X2 [Jatropha curcas]
3 Hb_003120_080 0.0569668644 - - PREDICTED: COPII coat assembly protein SEC16 isoform X1 [Jatropha curcas]
4 Hb_001628_070 0.061449933 - - hect ubiquitin-protein ligase, putative [Ricinus communis]
5 Hb_005542_140 0.0625122893 - - PREDICTED: U-box domain-containing protein 62-like [Jatropha curcas]
6 Hb_000402_230 0.0625570448 - - PREDICTED: sorting nexin 2A-like isoform X1 [Jatropha curcas]
7 Hb_000025_280 0.0660095168 transcription factor TF Family: C3H hypothetical protein JCGZ_07432 [Jatropha curcas]
8 Hb_000024_040 0.0664974657 - - PREDICTED: ALG-2 interacting protein X [Jatropha curcas]
9 Hb_000008_240 0.0682557389 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000487_380 0.0708779125 - - PREDICTED: protein PAT1 homolog 1 isoform X1 [Jatropha curcas]
11 Hb_009615_170 0.071481519 - - PREDICTED: sphingoid long-chain bases kinase 1 isoform X1 [Jatropha curcas]
12 Hb_000069_470 0.0733156458 - - PREDICTED: uncharacterized protein LOC105642863 isoform X1 [Jatropha curcas]
13 Hb_004143_100 0.0738342418 - - conserved hypothetical protein [Ricinus communis]
14 Hb_031042_050 0.07394448 - - PREDICTED: protein transport protein SEC16B homolog [Jatropha curcas]
15 Hb_023226_080 0.0739992806 transcription factor TF Family: C3H PREDICTED: 30-kDa cleavage and polyadenylation specificity factor 30 isoform X1 [Jatropha curcas]
16 Hb_003581_170 0.0740379795 - - PREDICTED: alpha-amylase 3, chloroplastic [Jatropha curcas]
17 Hb_011618_090 0.0741115864 desease resistance Gene Name: ABC_tran ABC transporter family protein [Hevea brasiliensis]
18 Hb_003835_070 0.0746019885 - - PREDICTED: uncharacterized protein LOC105641698 isoform X2 [Jatropha curcas]
19 Hb_000069_410 0.0747446223 - - PREDICTED: protein SDE2 homolog [Jatropha curcas]
20 Hb_000862_040 0.0753977316 - - ara4-interacting protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_004586_290 Hb_004586_290 Hb_005568_040 Hb_005568_040 Hb_004586_290--Hb_005568_040 Hb_003120_080 Hb_003120_080 Hb_004586_290--Hb_003120_080 Hb_001628_070 Hb_001628_070 Hb_004586_290--Hb_001628_070 Hb_005542_140 Hb_005542_140 Hb_004586_290--Hb_005542_140 Hb_000402_230 Hb_000402_230 Hb_004586_290--Hb_000402_230 Hb_000025_280 Hb_000025_280 Hb_004586_290--Hb_000025_280 Hb_000479_240 Hb_000479_240 Hb_005568_040--Hb_000479_240 Hb_004645_070 Hb_004645_070 Hb_005568_040--Hb_004645_070 Hb_000331_580 Hb_000331_580 Hb_005568_040--Hb_000331_580 Hb_000008_240 Hb_000008_240 Hb_005568_040--Hb_000008_240 Hb_003912_070 Hb_003912_070 Hb_005568_040--Hb_003912_070 Hb_001377_160 Hb_001377_160 Hb_003120_080--Hb_001377_160 Hb_004143_100 Hb_004143_100 Hb_003120_080--Hb_004143_100 Hb_003120_080--Hb_000402_230 Hb_011849_040 Hb_011849_040 Hb_003120_080--Hb_011849_040 Hb_000009_500 Hb_000009_500 Hb_003120_080--Hb_000009_500 Hb_004705_020 Hb_004705_020 Hb_001628_070--Hb_004705_020 Hb_006531_020 Hb_006531_020 Hb_001628_070--Hb_006531_020 Hb_000003_100 Hb_000003_100 Hb_001628_070--Hb_000003_100 Hb_000024_040 Hb_000024_040 Hb_001628_070--Hb_000024_040 Hb_000412_010 Hb_000412_010 Hb_001628_070--Hb_000412_010 Hb_023226_080 Hb_023226_080 Hb_005542_140--Hb_023226_080 Hb_159558_010 Hb_159558_010 Hb_005542_140--Hb_159558_010 Hb_007426_060 Hb_007426_060 Hb_005542_140--Hb_007426_060 Hb_000862_040 Hb_000862_040 Hb_005542_140--Hb_000862_040 Hb_005542_140--Hb_005568_040 Hb_001668_010 Hb_001668_010 Hb_005542_140--Hb_001668_010 Hb_000402_230--Hb_004143_100 Hb_001089_050 Hb_001089_050 Hb_000402_230--Hb_001089_050 Hb_000402_230--Hb_000009_500 Hb_008253_020 Hb_008253_020 Hb_000402_230--Hb_008253_020 Hb_003866_080 Hb_003866_080 Hb_000402_230--Hb_003866_080 Hb_000402_230--Hb_011849_040 Hb_004483_040 Hb_004483_040 Hb_000025_280--Hb_004483_040 Hb_000069_470 Hb_000069_470 Hb_000025_280--Hb_000069_470 Hb_000017_220 Hb_000017_220 Hb_000025_280--Hb_000017_220 Hb_000317_370 Hb_000317_370 Hb_000025_280--Hb_000317_370 Hb_031042_050 Hb_031042_050 Hb_000025_280--Hb_031042_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.31014 13.8023 5.3531 7.6031 7.02014 6.54775
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.60332 3.63027 5.913 9.15221 6.62258

CAGE analysis