Hb_004143_100

Information

Type -
Description -
Location Contig4143: 78873-81573
Sequence    

Annotation

kegg
ID rcu:RCOM_1039650
description hypothetical protein
nr
ID XP_002514052.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RJY3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1039650 PE=4 SV=1
Gene Ontology
ID GO:0016070
description hydroxyproline-rich glycoprotein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41038: 78895-81549 , PASA_asmbl_41040: 80403-80840
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004143_100 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000402_230 0.0427077122 - - PREDICTED: sorting nexin 2A-like isoform X1 [Jatropha curcas]
3 Hb_003866_080 0.0535969659 - - PREDICTED: uncharacterized protein LOC105639150 [Jatropha curcas]
4 Hb_004128_130 0.054351811 - - PREDICTED: protein MODIFIER OF SNC1 11 isoform X1 [Jatropha curcas]
5 Hb_001089_050 0.0547095922 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 4 [Jatropha curcas]
6 Hb_003120_080 0.0569763214 - - PREDICTED: COPII coat assembly protein SEC16 isoform X1 [Jatropha curcas]
7 Hb_002492_010 0.057011576 - - PREDICTED: inositol-tetrakisphosphate 1-kinase 2-like [Populus euphratica]
8 Hb_001205_200 0.0592339603 - - conserved hypothetical protein [Ricinus communis]
9 Hb_011849_040 0.0597665331 - - ubiquitin-protein ligase, putative [Ricinus communis]
10 Hb_000089_180 0.0605972096 - - PREDICTED: homoserine kinase-like [Jatropha curcas]
11 Hb_003906_200 0.0610380396 - - PREDICTED: zinc finger CCCH domain-containing protein 48 [Jatropha curcas]
12 Hb_000521_330 0.0623752149 - - conserved hypothetical protein [Ricinus communis]
13 Hb_003943_010 0.0648769658 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002026_210 0.0678013578 - - PREDICTED: probable serine/threonine-protein kinase At5g41260 [Jatropha curcas]
15 Hb_000009_500 0.0681467162 - - PREDICTED: NASP-related protein sim3 [Jatropha curcas]
16 Hb_001716_020 0.0683975788 - - hydrolase, putative [Ricinus communis]
17 Hb_000614_210 0.0693752569 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-1-like isoform X1 [Jatropha curcas]
18 Hb_000087_060 0.0697663177 - - protein transporter, putative [Ricinus communis]
19 Hb_079326_020 0.0707325756 - - conserved hypothetical protein [Ricinus communis]
20 Hb_008253_020 0.0709131556 - - PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform-like [Jatropha curcas]

Gene co-expression network

sample Hb_004143_100 Hb_004143_100 Hb_000402_230 Hb_000402_230 Hb_004143_100--Hb_000402_230 Hb_003866_080 Hb_003866_080 Hb_004143_100--Hb_003866_080 Hb_004128_130 Hb_004128_130 Hb_004143_100--Hb_004128_130 Hb_001089_050 Hb_001089_050 Hb_004143_100--Hb_001089_050 Hb_003120_080 Hb_003120_080 Hb_004143_100--Hb_003120_080 Hb_002492_010 Hb_002492_010 Hb_004143_100--Hb_002492_010 Hb_000402_230--Hb_001089_050 Hb_000009_500 Hb_000009_500 Hb_000402_230--Hb_000009_500 Hb_008253_020 Hb_008253_020 Hb_000402_230--Hb_008253_020 Hb_000402_230--Hb_003866_080 Hb_011849_040 Hb_011849_040 Hb_000402_230--Hb_011849_040 Hb_003866_080--Hb_001089_050 Hb_001767_140 Hb_001767_140 Hb_003866_080--Hb_001767_140 Hb_002085_030 Hb_002085_030 Hb_003866_080--Hb_002085_030 Hb_003866_080--Hb_002492_010 Hb_000089_180 Hb_000089_180 Hb_004128_130--Hb_000089_180 Hb_000046_570 Hb_000046_570 Hb_004128_130--Hb_000046_570 Hb_015026_130 Hb_015026_130 Hb_004128_130--Hb_015026_130 Hb_004109_230 Hb_004109_230 Hb_004128_130--Hb_004109_230 Hb_000521_330 Hb_000521_330 Hb_004128_130--Hb_000521_330 Hb_000861_080 Hb_000861_080 Hb_001089_050--Hb_000861_080 Hb_001545_150 Hb_001545_150 Hb_001089_050--Hb_001545_150 Hb_001716_020 Hb_001716_020 Hb_001089_050--Hb_001716_020 Hb_001377_160 Hb_001377_160 Hb_003120_080--Hb_001377_160 Hb_004586_290 Hb_004586_290 Hb_003120_080--Hb_004586_290 Hb_003120_080--Hb_000402_230 Hb_003120_080--Hb_011849_040 Hb_003120_080--Hb_000009_500 Hb_002492_010--Hb_001716_020 Hb_001481_060 Hb_001481_060 Hb_002492_010--Hb_001481_060 Hb_000087_060 Hb_000087_060 Hb_002492_010--Hb_000087_060 Hb_004994_240 Hb_004994_240 Hb_002492_010--Hb_004994_240 Hb_002492_010--Hb_001089_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.6205 21.7608 11.4702 16.0046 10.4992 12.1653
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.6283 10.4402 8.6709 14.0326 11.0067

CAGE analysis