Hb_004128_130

Information

Type -
Description -
Location Contig4128: 110432-113781
Sequence    

Annotation

kegg
ID pop:POPTR_0006s13630g
description hypothetical protein
nr
ID XP_012082243.1
description PREDICTED: protein MODIFIER OF SNC1 11 isoform X1 [Jatropha curcas]
swissprot
ID Q9LZ08
description Protein MODIFIER OF SNC1 11 OS=Arabidopsis thaliana GN=MOS11 PE=1 SV=1
trembl
ID A0A067KB47
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16438 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40864: 110444-113705 , PASA_asmbl_40865: 110444-112608
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004128_130 0.0 - - PREDICTED: protein MODIFIER OF SNC1 11 isoform X1 [Jatropha curcas]
2 Hb_000089_180 0.0434889389 - - PREDICTED: homoserine kinase-like [Jatropha curcas]
3 Hb_004143_100 0.054351811 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000046_570 0.0651837999 - - hypothetical protein JCGZ_01998 [Jatropha curcas]
5 Hb_015026_130 0.0706632901 - - quinone oxidoreductase, putative [Ricinus communis]
6 Hb_004109_230 0.0726550455 - - heat shock protein binding protein, putative [Ricinus communis]
7 Hb_000521_330 0.0740746754 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000069_480 0.075372209 - - conserved hypothetical protein [Ricinus communis]
9 Hb_031527_030 0.0756982971 - - PREDICTED: ribosomal RNA processing protein 1 homolog [Jatropha curcas]
10 Hb_007062_030 0.0770895278 - - hypothetical protein VITISV_039033 [Vitis vinifera]
11 Hb_003943_010 0.0788489074 - - conserved hypothetical protein [Ricinus communis]
12 Hb_003906_200 0.0796448531 - - PREDICTED: zinc finger CCCH domain-containing protein 48 [Jatropha curcas]
13 Hb_000215_300 0.0797685847 - - mitochondrial processing peptidase alpha subunit, putative [Ricinus communis]
14 Hb_000085_450 0.0799626154 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 20 [Jatropha curcas]
15 Hb_002492_010 0.0801498084 - - PREDICTED: inositol-tetrakisphosphate 1-kinase 2-like [Populus euphratica]
16 Hb_003120_080 0.0812377413 - - PREDICTED: COPII coat assembly protein SEC16 isoform X1 [Jatropha curcas]
17 Hb_028962_020 0.0820861224 - - hypothetical protein POPTR_0016s00660g [Populus trichocarpa]
18 Hb_004037_020 0.0823078569 - - PREDICTED: uncharacterized protein LOC105632366 isoform X1 [Jatropha curcas]
19 Hb_006520_040 0.0829518903 - - PREDICTED: uncharacterized protein LOC105641714 isoform X2 [Jatropha curcas]
20 Hb_008253_020 0.0831739883 - - PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform-like [Jatropha curcas]

Gene co-expression network

sample Hb_004128_130 Hb_004128_130 Hb_000089_180 Hb_000089_180 Hb_004128_130--Hb_000089_180 Hb_004143_100 Hb_004143_100 Hb_004128_130--Hb_004143_100 Hb_000046_570 Hb_000046_570 Hb_004128_130--Hb_000046_570 Hb_015026_130 Hb_015026_130 Hb_004128_130--Hb_015026_130 Hb_004109_230 Hb_004109_230 Hb_004128_130--Hb_004109_230 Hb_000521_330 Hb_000521_330 Hb_004128_130--Hb_000521_330 Hb_000089_180--Hb_015026_130 Hb_000085_450 Hb_000085_450 Hb_000089_180--Hb_000085_450 Hb_000089_180--Hb_004143_100 Hb_001408_110 Hb_001408_110 Hb_000089_180--Hb_001408_110 Hb_004037_020 Hb_004037_020 Hb_000089_180--Hb_004037_020 Hb_000402_230 Hb_000402_230 Hb_004143_100--Hb_000402_230 Hb_003866_080 Hb_003866_080 Hb_004143_100--Hb_003866_080 Hb_001089_050 Hb_001089_050 Hb_004143_100--Hb_001089_050 Hb_003120_080 Hb_003120_080 Hb_004143_100--Hb_003120_080 Hb_002492_010 Hb_002492_010 Hb_004143_100--Hb_002492_010 Hb_007062_040 Hb_007062_040 Hb_000046_570--Hb_007062_040 Hb_004586_060 Hb_004586_060 Hb_000046_570--Hb_004586_060 Hb_007248_030 Hb_007248_030 Hb_000046_570--Hb_007248_030 Hb_000390_250 Hb_000390_250 Hb_000046_570--Hb_000390_250 Hb_001405_210 Hb_001405_210 Hb_000046_570--Hb_001405_210 Hb_003912_040 Hb_003912_040 Hb_000046_570--Hb_003912_040 Hb_015026_130--Hb_000085_450 Hb_001114_110 Hb_001114_110 Hb_015026_130--Hb_001114_110 Hb_001141_310 Hb_001141_310 Hb_015026_130--Hb_001141_310 Hb_001258_110 Hb_001258_110 Hb_015026_130--Hb_001258_110 Hb_000009_500 Hb_000009_500 Hb_004109_230--Hb_000009_500 Hb_000139_130 Hb_000139_130 Hb_004109_230--Hb_000139_130 Hb_028512_020 Hb_028512_020 Hb_004109_230--Hb_028512_020 Hb_003943_010 Hb_003943_010 Hb_004109_230--Hb_003943_010 Hb_014361_070 Hb_014361_070 Hb_004109_230--Hb_014361_070 Hb_011849_040 Hb_011849_040 Hb_004109_230--Hb_011849_040 Hb_000521_330--Hb_002492_010 Hb_000521_330--Hb_004143_100 Hb_000189_600 Hb_000189_600 Hb_000521_330--Hb_000189_600 Hb_000521_330--Hb_000089_180 Hb_000029_060 Hb_000029_060 Hb_000521_330--Hb_000029_060 Hb_003906_200 Hb_003906_200 Hb_000521_330--Hb_003906_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.8966 24.0206 14.1162 26.3685 12.6132 15.0766
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.7404 12.6015 9.79464 18.6456 14.6862

CAGE analysis