Hb_001141_310

Information

Type -
Description -
Location Contig1141: 211608-214766
Sequence    

Annotation

kegg
ID rcu:RCOM_0911910
description hypothetical protein
nr
ID XP_012069924.1
description PREDICTED: uncharacterized protein LOC105632212 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KVF5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02184 PE=4 SV=1
Gene Ontology
ID GO:0009570
description spindle assembly abnormal 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04260: 211607-214744 , PASA_asmbl_04261: 212689-214744
cDNA
(Sanger)
(ID:Location)		 018_K01.ab1: 212829-214644

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001141_310 0.0 - - PREDICTED: uncharacterized protein LOC105632212 [Jatropha curcas]
2 Hb_000258_110 0.0538668065 - - PREDICTED: probable apyrase 6 isoform X1 [Jatropha curcas]
3 Hb_015026_130 0.0738608267 - - quinone oxidoreductase, putative [Ricinus communis]
4 Hb_121089_030 0.0787302464 - - PREDICTED: dynamin-related protein 5A [Jatropha curcas]
5 Hb_086063_020 0.0789064097 transcription factor TF Family: SNF2 PREDICTED: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [Jatropha curcas]
6 Hb_188063_050 0.0811122602 - - PREDICTED: putative G3BP-like protein [Jatropha curcas]
7 Hb_001552_030 0.0842491414 - - PREDICTED: galactoside 2-alpha-L-fucosyltransferase-like isoform X1 [Jatropha curcas]
8 Hb_000238_030 0.0849531327 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
9 Hb_005797_010 0.0853789826 - - PREDICTED: lysophospholipid acyltransferase 1-like [Jatropha curcas]
10 Hb_000215_300 0.0861709325 - - mitochondrial processing peptidase alpha subunit, putative [Ricinus communis]
11 Hb_004109_370 0.0862507496 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
12 Hb_000120_280 0.0866130793 - - PREDICTED: protein transport protein SEC23 [Jatropha curcas]
13 Hb_000836_460 0.0877478128 - - PREDICTED: uncharacterized protein LOC105628435 [Jatropha curcas]
14 Hb_000600_060 0.0888397766 - - PREDICTED: uncharacterized protein LOC105633515 isoform X1 [Jatropha curcas]
15 Hb_000085_450 0.0892230342 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 20 [Jatropha curcas]
16 Hb_004128_130 0.0896262541 - - PREDICTED: protein MODIFIER OF SNC1 11 isoform X1 [Jatropha curcas]
17 Hb_003020_100 0.0901771179 - - PREDICTED: transcription initiation factor IIA large subunit [Jatropha curcas]
18 Hb_133702_030 0.0901950015 - - PREDICTED: uric acid degradation bifunctional protein TTL isoform X1 [Jatropha curcas]
19 Hb_000130_020 0.0903230275 - - Phosphoenolpyruvate carboxylase, putative [Ricinus communis]
20 Hb_005460_050 0.0914764726 - - COR413-PM2, putative [Ricinus communis]

Gene co-expression network

sample Hb_001141_310 Hb_001141_310 Hb_000258_110 Hb_000258_110 Hb_001141_310--Hb_000258_110 Hb_015026_130 Hb_015026_130 Hb_001141_310--Hb_015026_130 Hb_121089_030 Hb_121089_030 Hb_001141_310--Hb_121089_030 Hb_086063_020 Hb_086063_020 Hb_001141_310--Hb_086063_020 Hb_188063_050 Hb_188063_050 Hb_001141_310--Hb_188063_050 Hb_001552_030 Hb_001552_030 Hb_001141_310--Hb_001552_030 Hb_000836_460 Hb_000836_460 Hb_000258_110--Hb_000836_460 Hb_000258_110--Hb_086063_020 Hb_000238_030 Hb_000238_030 Hb_000258_110--Hb_000238_030 Hb_000215_300 Hb_000215_300 Hb_000258_110--Hb_000215_300 Hb_004037_020 Hb_004037_020 Hb_000258_110--Hb_004037_020 Hb_000089_180 Hb_000089_180 Hb_015026_130--Hb_000089_180 Hb_000085_450 Hb_000085_450 Hb_015026_130--Hb_000085_450 Hb_001114_110 Hb_001114_110 Hb_015026_130--Hb_001114_110 Hb_004128_130 Hb_004128_130 Hb_015026_130--Hb_004128_130 Hb_001258_110 Hb_001258_110 Hb_015026_130--Hb_001258_110 Hb_000017_230 Hb_000017_230 Hb_121089_030--Hb_000017_230 Hb_030982_010 Hb_030982_010 Hb_121089_030--Hb_030982_010 Hb_021165_010 Hb_021165_010 Hb_121089_030--Hb_021165_010 Hb_000320_290 Hb_000320_290 Hb_121089_030--Hb_000320_290 Hb_121089_030--Hb_001552_030 Hb_010042_030 Hb_010042_030 Hb_121089_030--Hb_010042_030 Hb_086063_020--Hb_000215_300 Hb_086063_020--Hb_004037_020 Hb_001405_210 Hb_001405_210 Hb_086063_020--Hb_001405_210 Hb_000702_090 Hb_000702_090 Hb_086063_020--Hb_000702_090 Hb_016172_030 Hb_016172_030 Hb_086063_020--Hb_016172_030 Hb_007137_050 Hb_007137_050 Hb_188063_050--Hb_007137_050 Hb_188063_050--Hb_000320_290 Hb_188063_050--Hb_000258_110 Hb_188063_050--Hb_086063_020 Hb_002740_090 Hb_002740_090 Hb_188063_050--Hb_002740_090 Hb_000243_300 Hb_000243_300 Hb_188063_050--Hb_000243_300 Hb_001552_030--Hb_000017_230 Hb_001488_220 Hb_001488_220 Hb_001552_030--Hb_001488_220 Hb_001085_290 Hb_001085_290 Hb_001552_030--Hb_001085_290 Hb_004109_370 Hb_004109_370 Hb_001552_030--Hb_004109_370 Hb_002784_030 Hb_002784_030 Hb_001552_030--Hb_002784_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
36.1022 38.6323 39.552 60.6646 33.2259 33.5126
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
30.1463 17.0188 19.5327 53.3267 26.6392

CAGE analysis