Hb_001258_110

Information

Type -
Description -
Location Contig1258: 111674-129116
Sequence    

Annotation

kegg
ID rcu:RCOM_0188460
description transporter, putative
nr
ID XP_002528908.1
description transporter, putative [Ricinus communis]
swissprot
ID Q9FLG8
description Probable sphingolipid transporter spinster homolog 2 OS=Arabidopsis thaliana GN=At5g64500 PE=2 SV=1
trembl
ID B9SSD9
description Transporter, putative OS=Ricinus communis GN=RCOM_0188460 PE=4 SV=1
Gene Ontology
ID GO:0016021
description probable sphingolipid transporter spinster homolog 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07897: 111809-129092
cDNA
(Sanger)
(ID:Location)		 048_A04.ab1: 111809-114129

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001258_110 0.0 - - transporter, putative [Ricinus communis]
2 Hb_001014_210 0.060769144 - - CYP51 [Hevea brasiliensis]
3 Hb_002284_250 0.0685798159 - - PREDICTED: epidermal growth factor receptor substrate 15-like 1 [Jatropha curcas]
4 Hb_005663_110 0.0705819158 - - PREDICTED: large proline-rich protein BAG6 isoform X2 [Jatropha curcas]
5 Hb_000130_180 0.0727660518 - - PREDICTED: GPI inositol-deacylase-like isoform X2 [Jatropha curcas]
6 Hb_015026_130 0.074975317 - - quinone oxidoreductase, putative [Ricinus communis]
7 Hb_001434_080 0.0829708098 - - PREDICTED: probable protein S-acyltransferase 7 [Jatropha curcas]
8 Hb_000243_300 0.0830734261 - - catalytic, putative [Ricinus communis]
9 Hb_003055_040 0.0835416768 - - PREDICTED: secretory carrier-associated membrane protein 3-like isoform X1 [Jatropha curcas]
10 Hb_039946_050 0.0838421809 - - catalytic, putative [Ricinus communis]
11 Hb_004531_120 0.0858946591 - - PREDICTED: uncharacterized protein LOC105635025 [Jatropha curcas]
12 Hb_031527_030 0.0866535464 - - PREDICTED: ribosomal RNA processing protein 1 homolog [Jatropha curcas]
13 Hb_004102_170 0.0866684887 - - PREDICTED: lys-63-specific deubiquitinase BRCC36-like [Jatropha curcas]
14 Hb_000981_030 0.0873746365 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105640649 [Jatropha curcas]
15 Hb_001442_060 0.088927223 - - PREDICTED: uncharacterized protein LOC105638091 isoform X1 [Jatropha curcas]
16 Hb_000208_280 0.0891677583 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 78 [Jatropha curcas]
17 Hb_179306_020 0.0892276848 - - PREDICTED: uncharacterized protein LOC105634392 isoform X1 [Jatropha curcas]
18 Hb_002728_080 0.0892566742 - - WD-repeat protein, putative [Ricinus communis]
19 Hb_001114_110 0.0900075127 - - PREDICTED: probable ubiquitin-like-specific protease 2A isoform X1 [Jatropha curcas]
20 Hb_001821_150 0.0904856974 - - PREDICTED: potassium transporter 7-like [Jatropha curcas]

Gene co-expression network

sample Hb_001258_110 Hb_001258_110 Hb_001014_210 Hb_001014_210 Hb_001258_110--Hb_001014_210 Hb_002284_250 Hb_002284_250 Hb_001258_110--Hb_002284_250 Hb_005663_110 Hb_005663_110 Hb_001258_110--Hb_005663_110 Hb_000130_180 Hb_000130_180 Hb_001258_110--Hb_000130_180 Hb_015026_130 Hb_015026_130 Hb_001258_110--Hb_015026_130 Hb_001434_080 Hb_001434_080 Hb_001258_110--Hb_001434_080 Hb_001014_210--Hb_000130_180 Hb_003683_020 Hb_003683_020 Hb_001014_210--Hb_003683_020 Hb_009569_040 Hb_009569_040 Hb_001014_210--Hb_009569_040 Hb_000208_280 Hb_000208_280 Hb_001014_210--Hb_000208_280 Hb_007481_010 Hb_007481_010 Hb_001014_210--Hb_007481_010 Hb_001437_190 Hb_001437_190 Hb_002284_250--Hb_001437_190 Hb_000062_020 Hb_000062_020 Hb_002284_250--Hb_000062_020 Hb_001821_150 Hb_001821_150 Hb_002284_250--Hb_001821_150 Hb_003912_070 Hb_003912_070 Hb_002284_250--Hb_003912_070 Hb_004531_120 Hb_004531_120 Hb_002284_250--Hb_004531_120 Hb_003544_030 Hb_003544_030 Hb_005663_110--Hb_003544_030 Hb_005663_110--Hb_001434_080 Hb_004677_050 Hb_004677_050 Hb_005663_110--Hb_004677_050 Hb_000984_170 Hb_000984_170 Hb_005663_110--Hb_000984_170 Hb_000327_250 Hb_000327_250 Hb_005663_110--Hb_000327_250 Hb_039946_050 Hb_039946_050 Hb_005663_110--Hb_039946_050 Hb_000130_180--Hb_001821_150 Hb_000140_350 Hb_000140_350 Hb_000130_180--Hb_000140_350 Hb_000130_180--Hb_002284_250 Hb_000130_180--Hb_004531_120 Hb_000089_180 Hb_000089_180 Hb_015026_130--Hb_000089_180 Hb_000085_450 Hb_000085_450 Hb_015026_130--Hb_000085_450 Hb_001114_110 Hb_001114_110 Hb_015026_130--Hb_001114_110 Hb_004128_130 Hb_004128_130 Hb_015026_130--Hb_004128_130 Hb_001141_310 Hb_001141_310 Hb_015026_130--Hb_001141_310 Hb_001434_080--Hb_003544_030 Hb_001500_140 Hb_001500_140 Hb_001434_080--Hb_001500_140 Hb_011016_050 Hb_011016_050 Hb_001434_080--Hb_011016_050 Hb_002989_020 Hb_002989_020 Hb_001434_080--Hb_002989_020 Hb_001434_080--Hb_000327_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.24941 14.8885 8.74858 24.6012 12.8254 14.6425
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.87417 8.78105 7.9113 19.8929 10.9156

CAGE analysis