Hb_001114_110

Information

Type -
Description -
Location Contig1114: 99785-115354
Sequence    

Annotation

kegg
ID rcu:RCOM_0886160
description sentrin/sumo-specific protease, putative (EC:3.6.1.5)
nr
ID XP_012081353.1
description PREDICTED: probable ubiquitin-like-specific protease 2A isoform X1 [Jatropha curcas]
swissprot
ID Q0WKV8
description Probable ubiquitin-like-specific protease 2A OS=Arabidopsis thaliana GN=ULP2A PE=2 SV=2
trembl
ID A0A067KDN9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18741 PE=4 SV=1
Gene Ontology
ID GO:0016787
description sentrin sumo-specific

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03482: 99640-100862 , PASA_asmbl_03483: 100387-100612 , PASA_asmbl_03484: 100893-102873 , PASA_asmbl_03485: 103198-103320 , PASA_asmbl_03486: 109306-112224 , PASA_asmbl_03487: 112272-113657 , PASA_asmbl_03488: 113976-115254
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001114_110 0.0 - - PREDICTED: probable ubiquitin-like-specific protease 2A isoform X1 [Jatropha curcas]
2 Hb_015026_130 0.0609280973 - - quinone oxidoreductase, putative [Ricinus communis]
3 Hb_021165_010 0.0618861698 - - PREDICTED: splicing factor U2af large subunit B-like isoform X1 [Jatropha curcas]
4 Hb_000962_030 0.0701907266 - - PREDICTED: metal tolerance protein C2 [Jatropha curcas]
5 Hb_031527_030 0.07187997 - - PREDICTED: ribosomal RNA processing protein 1 homolog [Jatropha curcas]
6 Hb_016172_030 0.0747241834 - - PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC [Jatropha curcas]
7 Hb_001434_080 0.0761871829 - - PREDICTED: probable protein S-acyltransferase 7 [Jatropha curcas]
8 Hb_001329_200 0.078163197 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 1 [Jatropha curcas]
9 Hb_000089_180 0.0785623922 - - PREDICTED: homoserine kinase-like [Jatropha curcas]
10 Hb_003020_100 0.0807532977 - - PREDICTED: transcription initiation factor IIA large subunit [Jatropha curcas]
11 Hb_000017_230 0.0811151625 - - hypothetical protein JCGZ_20558 [Jatropha curcas]
12 Hb_006006_040 0.0812044383 - - S-methyl-5-thioribose kinase isoform 2 [Theobroma cacao]
13 Hb_007248_030 0.081543821 - - PREDICTED: uncharacterized protein LOC105633558 [Jatropha curcas]
14 Hb_000460_080 0.0817558454 - - acyl-coenzyme A binding domain containing, putative [Ricinus communis]
15 Hb_001481_060 0.0819819853 - - PREDICTED: E3 ubiquitin-protein ligase HOS1 isoform X1 [Jatropha curcas]
16 Hb_000085_450 0.0836131689 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 20 [Jatropha curcas]
17 Hb_009615_160 0.0837524768 - - PREDICTED: pyruvate kinase, cytosolic isozyme [Jatropha curcas]
18 Hb_121089_030 0.0841497835 - - PREDICTED: dynamin-related protein 5A [Jatropha curcas]
19 Hb_004102_170 0.0846107676 - - PREDICTED: lys-63-specific deubiquitinase BRCC36-like [Jatropha curcas]
20 Hb_007062_030 0.0846222374 - - hypothetical protein VITISV_039033 [Vitis vinifera]

Gene co-expression network

sample Hb_001114_110 Hb_001114_110 Hb_015026_130 Hb_015026_130 Hb_001114_110--Hb_015026_130 Hb_021165_010 Hb_021165_010 Hb_001114_110--Hb_021165_010 Hb_000962_030 Hb_000962_030 Hb_001114_110--Hb_000962_030 Hb_031527_030 Hb_031527_030 Hb_001114_110--Hb_031527_030 Hb_016172_030 Hb_016172_030 Hb_001114_110--Hb_016172_030 Hb_001434_080 Hb_001434_080 Hb_001114_110--Hb_001434_080 Hb_000089_180 Hb_000089_180 Hb_015026_130--Hb_000089_180 Hb_000085_450 Hb_000085_450 Hb_015026_130--Hb_000085_450 Hb_004128_130 Hb_004128_130 Hb_015026_130--Hb_004128_130 Hb_001141_310 Hb_001141_310 Hb_015026_130--Hb_001141_310 Hb_001258_110 Hb_001258_110 Hb_015026_130--Hb_001258_110 Hb_000702_090 Hb_000702_090 Hb_021165_010--Hb_000702_090 Hb_021165_010--Hb_016172_030 Hb_008289_040 Hb_008289_040 Hb_021165_010--Hb_008289_040 Hb_000017_230 Hb_000017_230 Hb_021165_010--Hb_000017_230 Hb_060980_010 Hb_060980_010 Hb_021165_010--Hb_060980_010 Hb_002110_080 Hb_002110_080 Hb_000962_030--Hb_002110_080 Hb_001481_060 Hb_001481_060 Hb_000962_030--Hb_001481_060 Hb_007248_030 Hb_007248_030 Hb_000962_030--Hb_007248_030 Hb_004705_170 Hb_004705_170 Hb_000962_030--Hb_004705_170 Hb_001405_210 Hb_001405_210 Hb_000962_030--Hb_001405_210 Hb_012286_040 Hb_012286_040 Hb_031527_030--Hb_012286_040 Hb_012055_040 Hb_012055_040 Hb_031527_030--Hb_012055_040 Hb_000003_100 Hb_000003_100 Hb_031527_030--Hb_000003_100 Hb_004037_020 Hb_004037_020 Hb_031527_030--Hb_004037_020 Hb_031527_030--Hb_000089_180 Hb_011849_040 Hb_011849_040 Hb_031527_030--Hb_011849_040 Hb_016172_030--Hb_060980_010 Hb_016172_030--Hb_004037_020 Hb_027506_010 Hb_027506_010 Hb_016172_030--Hb_027506_010 Hb_065500_020 Hb_065500_020 Hb_016172_030--Hb_065500_020 Hb_024650_080 Hb_024650_080 Hb_016172_030--Hb_024650_080 Hb_005663_110 Hb_005663_110 Hb_001434_080--Hb_005663_110 Hb_003544_030 Hb_003544_030 Hb_001434_080--Hb_003544_030 Hb_001500_140 Hb_001500_140 Hb_001434_080--Hb_001500_140 Hb_011016_050 Hb_011016_050 Hb_001434_080--Hb_011016_050 Hb_002989_020 Hb_002989_020 Hb_001434_080--Hb_002989_020 Hb_000327_250 Hb_000327_250 Hb_001434_080--Hb_000327_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.40839 3.1287 2.52132 4.02819 1.69919 2.3549
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.24036 1.52111 1.79124 3.02343 1.8086

CAGE analysis