Hb_012286_040

Information

Type -
Description -
Location Contig12286: 21206-35959
Sequence    

Annotation

kegg
ID pop:POPTR_0006s21160g
description POPTRDRAFT_653445; hypothetical protein
nr
ID XP_012090856.1
description PREDICTED: pre-mRNA-splicing factor RSE1 [Jatropha curcas]
swissprot
ID Q805F9
description DNA damage-binding protein 1 OS=Gallus gallus GN=DDB1 PE=1 SV=1
trembl
ID B9H9Y3
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s21160g PE=4 SV=2
Gene Ontology
ID GO:0005634
description splicing factor 3b subunit 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06930: 17276-20227 , PASA_asmbl_06931: 21362-22584 , PASA_asmbl_06934: 27499-35995
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012286_040 0.0 - - PREDICTED: pre-mRNA-splicing factor RSE1 [Jatropha curcas]
2 Hb_031527_030 0.0534003067 - - PREDICTED: ribosomal RNA processing protein 1 homolog [Jatropha curcas]
3 Hb_002749_060 0.0566921728 - - PREDICTED: protein transport protein Sec61 subunit alpha-like [Jatropha curcas]
4 Hb_041327_010 0.0578915572 - - PREDICTED: la-related protein 1A isoform X1 [Jatropha curcas]
5 Hb_000003_100 0.0580103665 transcription factor TF Family: SNF2 PREDICTED: transcription termination factor 2 isoform X5 [Jatropha curcas]
6 Hb_002890_130 0.0621801432 - - tip120, putative [Ricinus communis]
7 Hb_012092_060 0.0629403051 - - PREDICTED: KH domain-containing protein At4g18375 [Jatropha curcas]
8 Hb_000261_480 0.0647723093 - - 26S proteasome regulatory subunit family protein [Populus trichocarpa]
9 Hb_011819_020 0.0648676222 - - PREDICTED: uncharacterized protein LOC105643703 isoform X1 [Jatropha curcas]
10 Hb_000001_170 0.0649386031 - - amino acid transporter, putative [Ricinus communis]
11 Hb_002411_110 0.0669731792 - - PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Jatropha curcas]
12 Hb_102698_010 0.0670374398 - - PREDICTED: vacuolar cation/proton exchanger 5-like isoform X1 [Jatropha curcas]
13 Hb_001377_350 0.0672530764 - - PREDICTED: exportin-2 [Jatropha curcas]
14 Hb_001167_050 0.0674819727 - - PREDICTED: uncharacterized protein LOC105648014 [Jatropha curcas]
15 Hb_000069_120 0.0675596785 - - PREDICTED: uncharacterized protein LOC105124742 isoform X1 [Populus euphratica]
16 Hb_000537_050 0.0687075403 - - AP-2 complex subunit beta-1, putative [Ricinus communis]
17 Hb_004048_120 0.0697914011 - - PREDICTED: nuclear pore complex protein NUP160 isoform X3 [Jatropha curcas]
18 Hb_005663_110 0.0702558719 - - PREDICTED: large proline-rich protein BAG6 isoform X2 [Jatropha curcas]
19 Hb_004677_050 0.0706265222 - - PREDICTED: importin beta-like SAD2 isoform X2 [Jatropha curcas]
20 Hb_011231_020 0.0719182551 - - PREDICTED: proline-, glutamic acid- and leucine-rich protein 1 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_012286_040 Hb_012286_040 Hb_031527_030 Hb_031527_030 Hb_012286_040--Hb_031527_030 Hb_002749_060 Hb_002749_060 Hb_012286_040--Hb_002749_060 Hb_041327_010 Hb_041327_010 Hb_012286_040--Hb_041327_010 Hb_000003_100 Hb_000003_100 Hb_012286_040--Hb_000003_100 Hb_002890_130 Hb_002890_130 Hb_012286_040--Hb_002890_130 Hb_012092_060 Hb_012092_060 Hb_012286_040--Hb_012092_060 Hb_012055_040 Hb_012055_040 Hb_031527_030--Hb_012055_040 Hb_031527_030--Hb_000003_100 Hb_004037_020 Hb_004037_020 Hb_031527_030--Hb_004037_020 Hb_000089_180 Hb_000089_180 Hb_031527_030--Hb_000089_180 Hb_011849_040 Hb_011849_040 Hb_031527_030--Hb_011849_040 Hb_003280_020 Hb_003280_020 Hb_002749_060--Hb_003280_020 Hb_000890_070 Hb_000890_070 Hb_002749_060--Hb_000890_070 Hb_011819_020 Hb_011819_020 Hb_002749_060--Hb_011819_020 Hb_004048_120 Hb_004048_120 Hb_002749_060--Hb_004048_120 Hb_001377_350 Hb_001377_350 Hb_002749_060--Hb_001377_350 Hb_065500_020 Hb_065500_020 Hb_002749_060--Hb_065500_020 Hb_002639_080 Hb_002639_080 Hb_041327_010--Hb_002639_080 Hb_000261_480 Hb_000261_480 Hb_041327_010--Hb_000261_480 Hb_000230_260 Hb_000230_260 Hb_041327_010--Hb_000230_260 Hb_000069_120 Hb_000069_120 Hb_041327_010--Hb_000069_120 Hb_000537_050 Hb_000537_050 Hb_041327_010--Hb_000537_050 Hb_003216_090 Hb_003216_090 Hb_000003_100--Hb_003216_090 Hb_000331_580 Hb_000331_580 Hb_000003_100--Hb_000331_580 Hb_000003_100--Hb_002890_130 Hb_005563_060 Hb_005563_060 Hb_000003_100--Hb_005563_060 Hb_000008_240 Hb_000008_240 Hb_000003_100--Hb_000008_240 Hb_002890_130--Hb_011819_020 Hb_002411_110 Hb_002411_110 Hb_002890_130--Hb_002411_110 Hb_000317_100 Hb_000317_100 Hb_002890_130--Hb_000317_100 Hb_005215_010 Hb_005215_010 Hb_002890_130--Hb_005215_010 Hb_002890_130--Hb_000261_480 Hb_003912_070 Hb_003912_070 Hb_012092_060--Hb_003912_070 Hb_012092_060--Hb_000537_050 Hb_005568_040 Hb_005568_040 Hb_012092_060--Hb_005568_040 Hb_012092_060--Hb_000003_100 Hb_011287_050 Hb_011287_050 Hb_012092_060--Hb_011287_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.23642 8.06545 5.209 8.18268 4.6445 6.69344
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.20031 3.65796 4.35392 9.94088 7.23972

CAGE analysis