Hb_003216_090

Information

Type -
Description -
Location Contig3216: 83353-95586
Sequence    

Annotation

kegg
ID pop:POPTR_0002s22230g
description POPTRDRAFT_710294; hypothetical protein
nr
ID XP_012081440.1
description PREDICTED: nuclear pore complex protein NUP133 isoform X1 [Jatropha curcas]
swissprot
ID F4IGA5
description Nuclear pore complex protein NUP133 OS=Arabidopsis thaliana GN=NUP133 PE=1 SV=1
trembl
ID A0A067KDI4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18483 PE=4 SV=1
Gene Ontology
ID GO:0009507
description nuclear pore complex protein nup133 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34001: 56656-104131 , PASA_asmbl_34004: 85462-92439 , PASA_asmbl_34011: 92596-93862 , PASA_asmbl_34014: 90197-90362 , PASA_asmbl_34018: 93875-95438 , PASA_asmbl_34020: 94285-94559
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003216_090 0.0 - - PREDICTED: nuclear pore complex protein NUP133 isoform X1 [Jatropha curcas]
2 Hb_000003_100 0.0495378889 transcription factor TF Family: SNF2 PREDICTED: transcription termination factor 2 isoform X5 [Jatropha curcas]
3 Hb_001951_170 0.051403809 - - PREDICTED: uncharacterized protein LOC105649755 [Jatropha curcas]
4 Hb_000331_580 0.0585964133 - - PREDICTED: programmed cell death protein 4-like [Jatropha curcas]
5 Hb_000003_410 0.0647838944 - - PREDICTED: intron-binding protein aquarius [Jatropha curcas]
6 Hb_000665_230 0.0670549006 - - PREDICTED: uncharacterized protein LOC105637615 [Jatropha curcas]
7 Hb_001904_030 0.0678928639 - - PREDICTED: importin-5 [Jatropha curcas]
8 Hb_000934_210 0.0686714789 - - suppressor of ty, putative [Ricinus communis]
9 Hb_009486_170 0.0693114915 - - PREDICTED: eukaryotic translation initiation factor 4G [Jatropha curcas]
10 Hb_001167_050 0.0694225047 - - PREDICTED: uncharacterized protein LOC105648014 [Jatropha curcas]
11 Hb_002007_110 0.0705088419 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ25 isoform X2 [Jatropha curcas]
12 Hb_005568_040 0.0707367978 - - PREDICTED: uncharacterized protein LOC105628163 isoform X2 [Jatropha curcas]
13 Hb_005832_010 0.0712774511 - - PREDICTED: enhancer of mRNA-decapping protein 4 isoform X1 [Jatropha curcas]
14 Hb_004645_070 0.0718354842 - - PREDICTED: beta-1,3-galactosyltransferase 15 [Jatropha curcas]
15 Hb_006531_020 0.0719089705 - - PREDICTED: autophagy-related protein 13 [Jatropha curcas]
16 Hb_005563_060 0.072259484 - - PREDICTED: coatomer subunit alpha-1 [Jatropha curcas]
17 Hb_007245_020 0.0722964368 - - PREDICTED: pre-mRNA-processing factor 17-like isoform X1 [Populus euphratica]
18 Hb_123531_010 0.0729785227 - - PREDICTED: nuclear pore complex protein NUP98A isoform X1 [Jatropha curcas]
19 Hb_009486_090 0.0742071088 - - RNA binding protein, putative [Ricinus communis]
20 Hb_000037_220 0.0743130702 - - PREDICTED: vacuolar protein-sorting-associated protein 11 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_003216_090 Hb_003216_090 Hb_000003_100 Hb_000003_100 Hb_003216_090--Hb_000003_100 Hb_001951_170 Hb_001951_170 Hb_003216_090--Hb_001951_170 Hb_000331_580 Hb_000331_580 Hb_003216_090--Hb_000331_580 Hb_000003_410 Hb_000003_410 Hb_003216_090--Hb_000003_410 Hb_000665_230 Hb_000665_230 Hb_003216_090--Hb_000665_230 Hb_001904_030 Hb_001904_030 Hb_003216_090--Hb_001904_030 Hb_000003_100--Hb_000331_580 Hb_002890_130 Hb_002890_130 Hb_000003_100--Hb_002890_130 Hb_005563_060 Hb_005563_060 Hb_000003_100--Hb_005563_060 Hb_012286_040 Hb_012286_040 Hb_000003_100--Hb_012286_040 Hb_000008_240 Hb_000008_240 Hb_000003_100--Hb_000008_240 Hb_005832_010 Hb_005832_010 Hb_001951_170--Hb_005832_010 Hb_006031_010 Hb_006031_010 Hb_001951_170--Hb_006031_010 Hb_006531_020 Hb_006531_020 Hb_001951_170--Hb_006531_020 Hb_002007_110 Hb_002007_110 Hb_001951_170--Hb_002007_110 Hb_001951_170--Hb_000331_580 Hb_000331_580--Hb_000008_240 Hb_005568_040 Hb_005568_040 Hb_000331_580--Hb_005568_040 Hb_000331_580--Hb_002007_110 Hb_123531_010 Hb_123531_010 Hb_000331_580--Hb_123531_010 Hb_000331_580--Hb_006531_020 Hb_000958_050 Hb_000958_050 Hb_000003_410--Hb_000958_050 Hb_001133_030 Hb_001133_030 Hb_000003_410--Hb_001133_030 Hb_000934_210 Hb_000934_210 Hb_000003_410--Hb_000934_210 Hb_021596_010 Hb_021596_010 Hb_000003_410--Hb_021596_010 Hb_000009_410 Hb_000009_410 Hb_000003_410--Hb_000009_410 Hb_011689_030 Hb_011689_030 Hb_000665_230--Hb_011689_030 Hb_003805_040 Hb_003805_040 Hb_000665_230--Hb_003805_040 Hb_009486_170 Hb_009486_170 Hb_000665_230--Hb_009486_170 Hb_000176_100 Hb_000176_100 Hb_000665_230--Hb_000176_100 Hb_000665_230--Hb_001133_030 Hb_000665_230--Hb_002007_110 Hb_001904_030--Hb_005832_010 Hb_000172_340 Hb_000172_340 Hb_001904_030--Hb_000172_340 Hb_000479_240 Hb_000479_240 Hb_001904_030--Hb_000479_240 Hb_003604_050 Hb_003604_050 Hb_001904_030--Hb_003604_050 Hb_002027_280 Hb_002027_280 Hb_001904_030--Hb_002027_280 Hb_001221_090 Hb_001221_090 Hb_001904_030--Hb_001221_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.07338 10.7951 5.59156 6.18518 5.47697 6.07202
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.25165 2.44142 4.6629 9.12421 7.92306

CAGE analysis