Hb_000331_580

Information

Type -
Description -
Location Contig331: 469362-475760
Sequence    

Annotation

kegg
ID pop:POPTR_0012s09350g
description POPTRDRAFT_570193; MA3 domain-containing family protein
nr
ID XP_012079926.1
description PREDICTED: programmed cell death protein 4-like [Jatropha curcas]
swissprot
ID Q98TX3
description Programmed cell death protein 4 OS=Gallus gallus GN=PDCD4 PE=2 SV=1
trembl
ID A0A067KFE9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11366 PE=4 SV=1
Gene Ontology
ID GO:0005488
description programmed cell death protein 4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34819: 469389-475839 , PASA_asmbl_34820: 474892-475839 , PASA_asmbl_34821: 473045-473351 , PASA_asmbl_34822: 474327-474800
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000331_580 0.0 - - PREDICTED: programmed cell death protein 4-like [Jatropha curcas]
2 Hb_000008_240 0.0434560932 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000003_100 0.0503594872 transcription factor TF Family: SNF2 PREDICTED: transcription termination factor 2 isoform X5 [Jatropha curcas]
4 Hb_005568_040 0.0516715073 - - PREDICTED: uncharacterized protein LOC105628163 isoform X2 [Jatropha curcas]
5 Hb_002007_110 0.0547387313 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ25 isoform X2 [Jatropha curcas]
6 Hb_123531_010 0.055711699 - - PREDICTED: nuclear pore complex protein NUP98A isoform X1 [Jatropha curcas]
7 Hb_006531_020 0.0572510717 - - PREDICTED: autophagy-related protein 13 [Jatropha curcas]
8 Hb_001167_050 0.05763443 - - PREDICTED: uncharacterized protein LOC105648014 [Jatropha curcas]
9 Hb_003216_090 0.0585964133 - - PREDICTED: nuclear pore complex protein NUP133 isoform X1 [Jatropha curcas]
10 Hb_001951_170 0.0595779754 - - PREDICTED: uncharacterized protein LOC105649755 [Jatropha curcas]
11 Hb_003912_070 0.0607407476 - - PREDICTED: nuclear pore complex protein NUP85 [Jatropha curcas]
12 Hb_000479_240 0.0610366909 - - PREDICTED: probable ubiquitin conjugation factor E4 isoform X2 [Jatropha curcas]
13 Hb_004645_070 0.0621734391 - - PREDICTED: beta-1,3-galactosyltransferase 15 [Jatropha curcas]
14 Hb_031527_030 0.0678068268 - - PREDICTED: ribosomal RNA processing protein 1 homolog [Jatropha curcas]
15 Hb_002889_020 0.0697865817 - - PREDICTED: mitogen-activated protein kinase kinase 3 [Jatropha curcas]
16 Hb_022425_030 0.0701937126 - - PREDICTED: casein kinase I [Jatropha curcas]
17 Hb_000172_340 0.0702075696 - - PREDICTED: uncharacterized protein LOC101261327 [Solanum lycopersicum]
18 Hb_001904_030 0.0702860193 - - PREDICTED: importin-5 [Jatropha curcas]
19 Hb_007245_020 0.0712802824 - - PREDICTED: pre-mRNA-processing factor 17-like isoform X1 [Populus euphratica]
20 Hb_012092_060 0.0718029906 - - PREDICTED: KH domain-containing protein At4g18375 [Jatropha curcas]

Gene co-expression network

sample Hb_000331_580 Hb_000331_580 Hb_000008_240 Hb_000008_240 Hb_000331_580--Hb_000008_240 Hb_000003_100 Hb_000003_100 Hb_000331_580--Hb_000003_100 Hb_005568_040 Hb_005568_040 Hb_000331_580--Hb_005568_040 Hb_002007_110 Hb_002007_110 Hb_000331_580--Hb_002007_110 Hb_123531_010 Hb_123531_010 Hb_000331_580--Hb_123531_010 Hb_006531_020 Hb_006531_020 Hb_000331_580--Hb_006531_020 Hb_004517_020 Hb_004517_020 Hb_000008_240--Hb_004517_020 Hb_002768_050 Hb_002768_050 Hb_000008_240--Hb_002768_050 Hb_000008_240--Hb_005568_040 Hb_000008_240--Hb_002007_110 Hb_000479_240 Hb_000479_240 Hb_000008_240--Hb_000479_240 Hb_003216_090 Hb_003216_090 Hb_000003_100--Hb_003216_090 Hb_002890_130 Hb_002890_130 Hb_000003_100--Hb_002890_130 Hb_005563_060 Hb_005563_060 Hb_000003_100--Hb_005563_060 Hb_012286_040 Hb_012286_040 Hb_000003_100--Hb_012286_040 Hb_000003_100--Hb_000008_240 Hb_005568_040--Hb_000479_240 Hb_004645_070 Hb_004645_070 Hb_005568_040--Hb_004645_070 Hb_003912_070 Hb_003912_070 Hb_005568_040--Hb_003912_070 Hb_004586_290 Hb_004586_290 Hb_005568_040--Hb_004586_290 Hb_012055_110 Hb_012055_110 Hb_002007_110--Hb_012055_110 Hb_002007_110--Hb_123531_010 Hb_005832_010 Hb_005832_010 Hb_002007_110--Hb_005832_010 Hb_000066_150 Hb_000066_150 Hb_002007_110--Hb_000066_150 Hb_006031_010 Hb_006031_010 Hb_002007_110--Hb_006031_010 Hb_007245_020 Hb_007245_020 Hb_123531_010--Hb_007245_020 Hb_000934_210 Hb_000934_210 Hb_123531_010--Hb_000934_210 Hb_002357_070 Hb_002357_070 Hb_123531_010--Hb_002357_070 Hb_000172_340 Hb_000172_340 Hb_123531_010--Hb_000172_340 Hb_001628_070 Hb_001628_070 Hb_006531_020--Hb_001628_070 Hb_001951_170 Hb_001951_170 Hb_006531_020--Hb_001951_170 Hb_000009_410 Hb_000009_410 Hb_006531_020--Hb_000009_410 Hb_004705_020 Hb_004705_020 Hb_006531_020--Hb_004705_020 Hb_006531_020--Hb_123531_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.47829 25.2949 12.6841 17.8289 11.8026 13.3693
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.81348 5.65332 9.94144 19.8035 17.6761

CAGE analysis