Hb_002768_050

Information

Type -
Description -
Location Contig2768: 31113-32476
Sequence    

Annotation

kegg
ID rcu:RCOM_1302380
description Beta-1,3-galactosyltransferase sqv-2, putative (EC:2.4.1.134)
nr
ID XP_002529902.1
description Beta-1,3-galactosyltransferase sqv-2, putative [Ricinus communis]
swissprot
ID Q9MAP8
description Probable beta-1,3-galactosyltransferase 6 OS=Arabidopsis thaliana GN=B3GALT6 PE=2 SV=1
trembl
ID B9SV83
description Beta-1,3-galactosyltransferase sqv-2, putative OS=Ricinus communis GN=RCOM_1302380 PE=4 SV=1
Gene Ontology
ID GO:0005794
description probable beta- -galactosyltransferase 2 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28935: 31208-49649
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002768_050 0.0 - - Beta-1,3-galactosyltransferase sqv-2, putative [Ricinus communis]
2 Hb_000110_350 0.0506135435 - - PREDICTED: ubiquitin receptor RAD23c-like isoform X2 [Gossypium raimondii]
3 Hb_000445_060 0.051066567 - - PREDICTED: uncharacterized protein LOC105638996 isoform X3 [Jatropha curcas]
4 Hb_000008_240 0.0519075428 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000676_330 0.0579003328 - - protein with unknown function [Ricinus communis]
6 Hb_004517_020 0.058972157 - - PREDICTED: probable ubiquitin-like-specific protease 2B isoform X1 [Jatropha curcas]
7 Hb_003929_210 0.0601327943 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
8 Hb_000373_170 0.0603477056 - - PREDICTED: exocyst complex component SEC5A-like [Jatropha curcas]
9 Hb_000996_020 0.0605889096 - - PREDICTED: RNA-binding protein NOB1 [Jatropha curcas]
10 Hb_029977_040 0.0630461186 - - PREDICTED: uncharacterized protein LOC105640155 isoform X4 [Jatropha curcas]
11 Hb_000120_910 0.0658357065 - - plant ubiquilin, putative [Ricinus communis]
12 Hb_000661_120 0.0683604375 - - cap binding protein, putative [Ricinus communis]
13 Hb_004044_050 0.0706482266 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 34-like [Jatropha curcas]
14 Hb_000099_040 0.0712934377 - - unnamed protein product [Coffea canephora]
15 Hb_000879_040 0.0714577073 - - PREDICTED: calcium-transporting ATPase 3, endoplasmic reticulum-type [Jatropha curcas]
16 Hb_001673_050 0.0715553872 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 8-like isoform X1 [Jatropha curcas]
17 Hb_003913_020 0.0717347962 - - PREDICTED: C2 and GRAM domain-containing protein At5g50170 [Jatropha curcas]
18 Hb_000977_300 0.0720613926 - - PREDICTED: LOW QUALITY PROTEIN: probable E3 ubiquitin-protein ligase ARI8 [Malus domestica]
19 Hb_000510_360 0.0721093087 transcription factor TF Family: GNAT PREDICTED: histone acetyltransferase GCN5 [Jatropha curcas]
20 Hb_000868_120 0.0727785018 - - PREDICTED: suppressor of mec-8 and unc-52 protein homolog 2 [Jatropha curcas]

Gene co-expression network

sample Hb_002768_050 Hb_002768_050 Hb_000110_350 Hb_000110_350 Hb_002768_050--Hb_000110_350 Hb_000445_060 Hb_000445_060 Hb_002768_050--Hb_000445_060 Hb_000008_240 Hb_000008_240 Hb_002768_050--Hb_000008_240 Hb_000676_330 Hb_000676_330 Hb_002768_050--Hb_000676_330 Hb_004517_020 Hb_004517_020 Hb_002768_050--Hb_004517_020 Hb_003929_210 Hb_003929_210 Hb_002768_050--Hb_003929_210 Hb_170077_010 Hb_170077_010 Hb_000110_350--Hb_170077_010 Hb_000179_190 Hb_000179_190 Hb_000110_350--Hb_000179_190 Hb_000110_350--Hb_003929_210 Hb_000110_350--Hb_000445_060 Hb_000996_020 Hb_000996_020 Hb_000110_350--Hb_000996_020 Hb_000445_060--Hb_000996_020 Hb_000868_120 Hb_000868_120 Hb_000445_060--Hb_000868_120 Hb_000661_120 Hb_000661_120 Hb_000445_060--Hb_000661_120 Hb_000373_170 Hb_000373_170 Hb_000445_060--Hb_000373_170 Hb_000331_580 Hb_000331_580 Hb_000008_240--Hb_000331_580 Hb_000008_240--Hb_004517_020 Hb_005568_040 Hb_005568_040 Hb_000008_240--Hb_005568_040 Hb_002007_110 Hb_002007_110 Hb_000008_240--Hb_002007_110 Hb_000479_240 Hb_000479_240 Hb_000008_240--Hb_000479_240 Hb_000206_160 Hb_000206_160 Hb_000676_330--Hb_000206_160 Hb_000676_330--Hb_000445_060 Hb_000676_330--Hb_000996_020 Hb_000676_330--Hb_000868_120 Hb_027506_010 Hb_027506_010 Hb_000676_330--Hb_027506_010 Hb_000120_910 Hb_000120_910 Hb_004517_020--Hb_000120_910 Hb_001723_010 Hb_001723_010 Hb_004517_020--Hb_001723_010 Hb_000977_300 Hb_000977_300 Hb_004517_020--Hb_000977_300 Hb_004517_020--Hb_000373_170 Hb_004517_020--Hb_000110_350 Hb_003939_060 Hb_003939_060 Hb_003929_210--Hb_003939_060 Hb_033312_130 Hb_033312_130 Hb_003929_210--Hb_033312_130 Hb_003929_210--Hb_000996_020 Hb_000358_220 Hb_000358_220 Hb_003929_210--Hb_000358_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.48525 20.0775 14.6825 12.6 10.9734 9.20813
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.48682 6.54613 6.98176 11.7857 14.3811

CAGE analysis