Hb_000661_120

Information

Type -
Description -
Location Contig661: 105682-118191
Sequence    

Annotation

kegg
ID rcu:RCOM_1579070
description cap binding protein, putative
nr
ID XP_002513540.1
description cap binding protein, putative [Ricinus communis]
swissprot
ID Q9SIU2
description Nuclear cap-binding protein subunit 1 OS=Arabidopsis thaliana GN=ABH1 PE=1 SV=2
trembl
ID B9RIH1
description Cap binding protein, putative OS=Ricinus communis GN=RCOM_1579070 PE=4 SV=1
Gene Ontology
ID GO:0005846
description nuclear cap-binding protein subunit 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52963: 105769-118182 , PASA_asmbl_52964: 113211-113783
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000661_120 0.0 - - cap binding protein, putative [Ricinus communis]
2 Hb_000996_020 0.0540036946 - - PREDICTED: RNA-binding protein NOB1 [Jatropha curcas]
3 Hb_000445_060 0.0561468003 - - PREDICTED: uncharacterized protein LOC105638996 isoform X3 [Jatropha curcas]
4 Hb_000373_170 0.0599684734 - - PREDICTED: exocyst complex component SEC5A-like [Jatropha curcas]
5 Hb_000340_030 0.0648639418 - - PREDICTED: myosin heavy chain, non-muscle-like [Jatropha curcas]
6 Hb_000529_060 0.0663608029 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 17 isoform X1 [Jatropha curcas]
7 Hb_000868_120 0.0665511275 - - PREDICTED: suppressor of mec-8 and unc-52 protein homolog 2 [Jatropha curcas]
8 Hb_003711_010 0.0671896238 - - isopropylmalate synthase, putative [Ricinus communis]
9 Hb_002768_050 0.0683604375 - - Beta-1,3-galactosyltransferase sqv-2, putative [Ricinus communis]
10 Hb_000336_020 0.0690443742 - - PREDICTED: phospholipid-transporting ATPase 2 [Jatropha curcas]
11 Hb_001723_010 0.0693155058 - - PREDICTED: E3 ubiquitin-protein ligase UPL6 [Jatropha curcas]
12 Hb_033642_120 0.069378892 - - PREDICTED: nucleolar GTP-binding protein 2 [Vitis vinifera]
13 Hb_004976_010 0.0714473833 - - hypothetical protein RCOM_1429110 [Ricinus communis]
14 Hb_000676_330 0.072467186 - - protein with unknown function [Ricinus communis]
15 Hb_005333_140 0.072902294 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 16 isoform X1 [Jatropha curcas]
16 Hb_002811_040 0.0739206348 - - 5'->3' exoribonuclease, putative [Ricinus communis]
17 Hb_000085_170 0.0745581062 - - PREDICTED: transcription initiation factor TFIID subunit 6-like isoform X1 [Jatropha curcas]
18 Hb_002461_020 0.0761324574 - - PREDICTED: uncharacterized protein LOC105642649 isoform X2 [Jatropha curcas]
19 Hb_000085_210 0.0763575793 - - DNA topoisomerase type I, putative [Ricinus communis]
20 Hb_000111_170 0.0768734729 - - PREDICTED: uncharacterized protein LOC105631234 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000661_120 Hb_000661_120 Hb_000996_020 Hb_000996_020 Hb_000661_120--Hb_000996_020 Hb_000445_060 Hb_000445_060 Hb_000661_120--Hb_000445_060 Hb_000373_170 Hb_000373_170 Hb_000661_120--Hb_000373_170 Hb_000340_030 Hb_000340_030 Hb_000661_120--Hb_000340_030 Hb_000529_060 Hb_000529_060 Hb_000661_120--Hb_000529_060 Hb_000868_120 Hb_000868_120 Hb_000661_120--Hb_000868_120 Hb_000996_020--Hb_000445_060 Hb_000996_020--Hb_000373_170 Hb_002461_020 Hb_002461_020 Hb_000996_020--Hb_002461_020 Hb_000996_020--Hb_000529_060 Hb_005333_140 Hb_005333_140 Hb_000996_020--Hb_005333_140 Hb_000445_060--Hb_000868_120 Hb_000110_350 Hb_000110_350 Hb_000445_060--Hb_000110_350 Hb_002768_050 Hb_002768_050 Hb_000445_060--Hb_002768_050 Hb_000445_060--Hb_000373_170 Hb_004517_020 Hb_004517_020 Hb_000373_170--Hb_004517_020 Hb_001723_010 Hb_001723_010 Hb_000373_170--Hb_001723_010 Hb_000373_170--Hb_002768_050 Hb_000340_030--Hb_001723_010 Hb_000139_320 Hb_000139_320 Hb_000340_030--Hb_000139_320 Hb_031641_010 Hb_031641_010 Hb_000340_030--Hb_031641_010 Hb_002849_170 Hb_002849_170 Hb_000340_030--Hb_002849_170 Hb_003711_010 Hb_003711_010 Hb_000340_030--Hb_003711_010 Hb_000340_030--Hb_000529_060 Hb_000977_300 Hb_000977_300 Hb_000529_060--Hb_000977_300 Hb_000046_600 Hb_000046_600 Hb_000529_060--Hb_000046_600 Hb_000529_060--Hb_005333_140 Hb_011972_020 Hb_011972_020 Hb_000529_060--Hb_011972_020 Hb_001171_030 Hb_001171_030 Hb_000529_060--Hb_001171_030 Hb_010287_020 Hb_010287_020 Hb_000868_120--Hb_010287_020 Hb_033642_120 Hb_033642_120 Hb_000868_120--Hb_033642_120 Hb_000676_330 Hb_000676_330 Hb_000868_120--Hb_000676_330 Hb_001439_220 Hb_001439_220 Hb_000868_120--Hb_001439_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.18664 12.1788 12.7615 8.08477 7.90751 7.1113
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.7261 5.63845 3.60262 9.8062 8.93109

CAGE analysis