Hb_003711_010

Information

Type -
Description -
Location Contig3711: 1488-11847
Sequence    

Annotation

kegg
ID rcu:RCOM_1267040
description isopropylmalate synthase, putative (EC:2.3.3.13)
nr
ID XP_002530549.1
description isopropylmalate synthase, putative [Ricinus communis]
swissprot
ID Q9C550
description 2-isopropylmalate synthase 2, chloroplastic OS=Arabidopsis thaliana GN=IPMS2 PE=1 SV=1
trembl
ID B9SX30
description Isopropylmalate synthase, putative OS=Ricinus communis GN=RCOM_1267040 PE=3 SV=1
Gene Ontology
ID GO:0009941
description 2-isopropylmalate synthase chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38054: 1448-11809 , PASA_asmbl_38055: 6536-6638
cDNA
(Sanger)
(ID:Location)		 002_E10.ab1: 8745-11786 , 012_H01.ab1: 11051-11786 , 018_O06.ab1: 11080-11786 , 024_G11.ab1: 11103-11779 , 043_N23.ab1: 11125-11809

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003711_010 0.0 - - isopropylmalate synthase, putative [Ricinus communis]
2 Hb_001723_010 0.0553384938 - - PREDICTED: E3 ubiquitin-protein ligase UPL6 [Jatropha curcas]
3 Hb_000340_030 0.0597573807 - - PREDICTED: myosin heavy chain, non-muscle-like [Jatropha curcas]
4 Hb_000684_510 0.0619352441 - - run and tbc1 domain containing 3, plant, putative [Ricinus communis]
5 Hb_000373_170 0.0619796011 - - PREDICTED: exocyst complex component SEC5A-like [Jatropha curcas]
6 Hb_000139_320 0.0640108037 - - PREDICTED: E3 ubiquitin-protein ligase RHF1A [Jatropha curcas]
7 Hb_000661_120 0.0671896238 - - cap binding protein, putative [Ricinus communis]
8 Hb_000868_120 0.0715177859 - - PREDICTED: suppressor of mec-8 and unc-52 protein homolog 2 [Jatropha curcas]
9 Hb_002016_090 0.0729040556 - - PREDICTED: DNA mismatch repair protein PMS1 [Jatropha curcas]
10 Hb_026980_020 0.0740842497 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os01g0234100-like [Jatropha curcas]
11 Hb_004517_020 0.0742114884 - - PREDICTED: probable ubiquitin-like-specific protease 2B isoform X1 [Jatropha curcas]
12 Hb_000617_230 0.0820068281 - - PREDICTED: tafazzin isoform X1 [Jatropha curcas]
13 Hb_000189_630 0.0827093417 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
14 Hb_000513_090 0.0832385189 - - PREDICTED: isocitrate dehydrogenase [NADP] [Jatropha curcas]
15 Hb_000445_060 0.0846866558 - - PREDICTED: uncharacterized protein LOC105638996 isoform X3 [Jatropha curcas]
16 Hb_012940_040 0.0848956993 - - Splicing factor, arginine/serine-rich, putative [Ricinus communis]
17 Hb_003849_140 0.085642835 - - PREDICTED: uncharacterized protein LOC105644697 [Jatropha curcas]
18 Hb_000996_020 0.0869729286 - - PREDICTED: RNA-binding protein NOB1 [Jatropha curcas]
19 Hb_000260_770 0.0879328062 - - er lumen protein retaining receptor, putative [Ricinus communis]
20 Hb_001534_210 0.0887806395 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105642316 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_003711_010 Hb_003711_010 Hb_001723_010 Hb_001723_010 Hb_003711_010--Hb_001723_010 Hb_000340_030 Hb_000340_030 Hb_003711_010--Hb_000340_030 Hb_000684_510 Hb_000684_510 Hb_003711_010--Hb_000684_510 Hb_000373_170 Hb_000373_170 Hb_003711_010--Hb_000373_170 Hb_000139_320 Hb_000139_320 Hb_003711_010--Hb_000139_320 Hb_000661_120 Hb_000661_120 Hb_003711_010--Hb_000661_120 Hb_001723_010--Hb_000340_030 Hb_004517_020 Hb_004517_020 Hb_001723_010--Hb_004517_020 Hb_001723_010--Hb_000139_320 Hb_001723_010--Hb_000373_170 Hb_000120_910 Hb_000120_910 Hb_001723_010--Hb_000120_910 Hb_000340_030--Hb_000139_320 Hb_031641_010 Hb_031641_010 Hb_000340_030--Hb_031641_010 Hb_002849_170 Hb_002849_170 Hb_000340_030--Hb_002849_170 Hb_000529_060 Hb_000529_060 Hb_000340_030--Hb_000529_060 Hb_000684_510--Hb_001723_010 Hb_000684_510--Hb_004517_020 Hb_000402_150 Hb_000402_150 Hb_000684_510--Hb_000402_150 Hb_000684_510--Hb_000373_170 Hb_000085_170 Hb_000085_170 Hb_000684_510--Hb_000085_170 Hb_000996_020 Hb_000996_020 Hb_000373_170--Hb_000996_020 Hb_000373_170--Hb_004517_020 Hb_000445_060 Hb_000445_060 Hb_000373_170--Hb_000445_060 Hb_000373_170--Hb_000661_120 Hb_002768_050 Hb_002768_050 Hb_000373_170--Hb_002768_050 Hb_026980_020 Hb_026980_020 Hb_000139_320--Hb_026980_020 Hb_102438_030 Hb_102438_030 Hb_000139_320--Hb_102438_030 Hb_000174_150 Hb_000174_150 Hb_000139_320--Hb_000174_150 Hb_000661_120--Hb_000996_020 Hb_000661_120--Hb_000445_060 Hb_000661_120--Hb_000340_030 Hb_000661_120--Hb_000529_060 Hb_000868_120 Hb_000868_120 Hb_000661_120--Hb_000868_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.0643 57.1984 52.2267 27.8644 26.7102 25.8646
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.8505 22.5755 18.9329 45.8186 25.8434

CAGE analysis