Hb_026980_020

Information

Type transcription factor
Description TF Family: B3
Location Contig26980: 43364-47470
Sequence    

Annotation

kegg
ID pop:POPTR_0004s14900g
description hypothetical protein
nr
ID XP_012066892.1
description PREDICTED: B3 domain-containing protein Os01g0234100-like [Jatropha curcas]
swissprot
ID Q0JP99
description B3 domain-containing protein Os01g0234100 OS=Oryza sativa subsp. japonica GN=Os01g0234100 PE=2 SV=1
trembl
ID A0A067L1H9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01635 PE=4 SV=1
Gene Ontology
ID GO:0005634
description b3 domain-containing protein os01g0234100-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28104: 44235-47388 , PASA_asmbl_28105: 45183-47388
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_026980_020 0.0 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os01g0234100-like [Jatropha curcas]
2 Hb_154580_010 0.065073407 - - hypothetical protein PRUPE_ppa002109mg [Prunus persica]
3 Hb_000340_030 0.0660902776 - - PREDICTED: myosin heavy chain, non-muscle-like [Jatropha curcas]
4 Hb_000139_320 0.0664983609 - - PREDICTED: E3 ubiquitin-protein ligase RHF1A [Jatropha curcas]
5 Hb_003711_010 0.0740842497 - - isopropylmalate synthase, putative [Ricinus communis]
6 Hb_003849_140 0.0754871845 - - PREDICTED: uncharacterized protein LOC105644697 [Jatropha curcas]
7 Hb_005542_050 0.0780974573 - - PREDICTED: LOW QUALITY PROTEIN: probable inactive serine/threonine-protein kinase scy1 [Prunus mume]
8 Hb_001430_080 0.0783945813 - - PREDICTED: putative mediator of RNA polymerase II transcription subunit 26 [Jatropha curcas]
9 Hb_002325_040 0.0810157863 - - PREDICTED: uncharacterized protein LOC105645422 isoform X1 [Jatropha curcas]
10 Hb_102438_030 0.0827264755 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 37-like isoform X1 [Jatropha curcas]
11 Hb_000661_120 0.0831246202 - - cap binding protein, putative [Ricinus communis]
12 Hb_002811_040 0.08374249 - - 5'->3' exoribonuclease, putative [Ricinus communis]
13 Hb_000102_050 0.0840564683 transcription factor TF Family: RB conserved hypothetical protein [Ricinus communis]
14 Hb_000723_110 0.0846793121 - - PREDICTED: TSL-kinase interacting protein 1 [Jatropha curcas]
15 Hb_001277_020 0.0850240339 - - PREDICTED: armadillo repeat-containing protein LFR [Jatropha curcas]
16 Hb_012565_050 0.0854641849 - - PREDICTED: U1 small nuclear ribonucleoprotein 70 kDa [Jatropha curcas]
17 Hb_000645_170 0.0855884794 - - conserved hypothetical protein [Ricinus communis]
18 Hb_004976_010 0.0857142505 - - hypothetical protein RCOM_1429110 [Ricinus communis]
19 Hb_001723_010 0.0857327508 - - PREDICTED: E3 ubiquitin-protein ligase UPL6 [Jatropha curcas]
20 Hb_000358_230 0.0869989701 - - protein phosphatases pp1 regulatory subunit, putative [Ricinus communis]

Gene co-expression network

sample Hb_026980_020 Hb_026980_020 Hb_154580_010 Hb_154580_010 Hb_026980_020--Hb_154580_010 Hb_000340_030 Hb_000340_030 Hb_026980_020--Hb_000340_030 Hb_000139_320 Hb_000139_320 Hb_026980_020--Hb_000139_320 Hb_003711_010 Hb_003711_010 Hb_026980_020--Hb_003711_010 Hb_003849_140 Hb_003849_140 Hb_026980_020--Hb_003849_140 Hb_005542_050 Hb_005542_050 Hb_026980_020--Hb_005542_050 Hb_002067_030 Hb_002067_030 Hb_154580_010--Hb_002067_030 Hb_008568_020 Hb_008568_020 Hb_154580_010--Hb_008568_020 Hb_003096_060 Hb_003096_060 Hb_154580_010--Hb_003096_060 Hb_000645_170 Hb_000645_170 Hb_154580_010--Hb_000645_170 Hb_005289_040 Hb_005289_040 Hb_154580_010--Hb_005289_040 Hb_001723_010 Hb_001723_010 Hb_000340_030--Hb_001723_010 Hb_000340_030--Hb_000139_320 Hb_031641_010 Hb_031641_010 Hb_000340_030--Hb_031641_010 Hb_002849_170 Hb_002849_170 Hb_000340_030--Hb_002849_170 Hb_000340_030--Hb_003711_010 Hb_000529_060 Hb_000529_060 Hb_000340_030--Hb_000529_060 Hb_000139_320--Hb_001723_010 Hb_000139_320--Hb_003711_010 Hb_102438_030 Hb_102438_030 Hb_000139_320--Hb_102438_030 Hb_000174_150 Hb_000174_150 Hb_000139_320--Hb_000174_150 Hb_003711_010--Hb_001723_010 Hb_000684_510 Hb_000684_510 Hb_003711_010--Hb_000684_510 Hb_000373_170 Hb_000373_170 Hb_003711_010--Hb_000373_170 Hb_000661_120 Hb_000661_120 Hb_003711_010--Hb_000661_120 Hb_001534_210 Hb_001534_210 Hb_003849_140--Hb_001534_210 Hb_000915_060 Hb_000915_060 Hb_003849_140--Hb_000915_060 Hb_004032_230 Hb_004032_230 Hb_003849_140--Hb_004032_230 Hb_000723_110 Hb_000723_110 Hb_003849_140--Hb_000723_110 Hb_000500_300 Hb_000500_300 Hb_003849_140--Hb_000500_300 Hb_010661_020 Hb_010661_020 Hb_005542_050--Hb_010661_020 Hb_002325_040 Hb_002325_040 Hb_005542_050--Hb_002325_040 Hb_000926_010 Hb_000926_010 Hb_005542_050--Hb_000926_010 Hb_000556_170 Hb_000556_170 Hb_005542_050--Hb_000556_170 Hb_010417_070 Hb_010417_070 Hb_005542_050--Hb_010417_070 Hb_002477_250 Hb_002477_250 Hb_005542_050--Hb_002477_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.6199 31.0392 26.7177 14.5312 18.0529 14.4514
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.8932 12.7006 6.59459 20.2848 11.6186

CAGE analysis