Hb_005542_050

Information

Type -
Description -
Location Contig5542: 48635-62527
Sequence    

Annotation

kegg
ID pmum:103321102
description probable inactive serine/threonine-protein kinase scy1
nr
ID XP_008221084.1
description PREDICTED: LOW QUALITY PROTEIN: probable inactive serine/threonine-protein kinase scy1 [Prunus mume]
swissprot
ID -
description -
trembl
ID M5XK58
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa001574mg PE=4 SV=1
Gene Ontology
ID GO:0004672
description probable inactive serine threonine-protein kinase scy1 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48428: 50121-50455 , PASA_asmbl_48430: 52830-53127 , PASA_asmbl_48431: 50457-62483
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005542_050 0.0 - - PREDICTED: LOW QUALITY PROTEIN: probable inactive serine/threonine-protein kinase scy1 [Prunus mume]
2 Hb_010661_020 0.0539463911 - - PREDICTED: uncharacterized protein LOC105630767 isoform X1 [Jatropha curcas]
3 Hb_002325_040 0.0603813991 - - PREDICTED: uncharacterized protein LOC105645422 isoform X1 [Jatropha curcas]
4 Hb_000926_010 0.0604351758 - - PREDICTED: uncharacterized protein LOC105632975 [Jatropha curcas]
5 Hb_000556_170 0.0670626144 - - PREDICTED: uncharacterized protein LOC105643102 isoform X2 [Jatropha curcas]
6 Hb_010417_070 0.0705693469 - - PREDICTED: uncharacterized protein LOC105645744 isoform X1 [Jatropha curcas]
7 Hb_002477_250 0.0735518352 - - DNA-directed RNA polymerase I 49 kDa polypeptide, putative [Ricinus communis]
8 Hb_001534_210 0.0736986572 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105642316 isoform X2 [Jatropha curcas]
9 Hb_001047_200 0.0740009504 - - PREDICTED: pre-mRNA-splicing factor 18 [Eucalyptus grandis]
10 Hb_004410_070 0.0763820472 - - PREDICTED: protein LTV1 homolog [Jatropha curcas]
11 Hb_000640_310 0.0776686804 - - hypothetical protein JCGZ_14055 [Jatropha curcas]
12 Hb_000768_180 0.0779849074 - - PREDICTED: uncharacterized protein LOC105632528 [Jatropha curcas]
13 Hb_026980_020 0.0780974573 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os01g0234100-like [Jatropha curcas]
14 Hb_029695_020 0.078687271 - - PREDICTED: inactive beta-amylase 4, chloroplastic [Jatropha curcas]
15 Hb_001430_080 0.0792357756 - - PREDICTED: putative mediator of RNA polymerase II transcription subunit 26 [Jatropha curcas]
16 Hb_000862_040 0.0796320473 - - ara4-interacting protein, putative [Ricinus communis]
17 Hb_000023_320 0.0796800263 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000823_030 0.0801533377 - - PREDICTED: DNA-directed RNA polymerase III subunit RPC5 [Jatropha curcas]
19 Hb_000236_470 0.0807383186 - - PREDICTED: pentatricopeptide repeat-containing protein At5g55840 [Jatropha curcas]
20 Hb_005260_010 0.0829049107 - - PREDICTED: golgin candidate 6 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_005542_050 Hb_005542_050 Hb_010661_020 Hb_010661_020 Hb_005542_050--Hb_010661_020 Hb_002325_040 Hb_002325_040 Hb_005542_050--Hb_002325_040 Hb_000926_010 Hb_000926_010 Hb_005542_050--Hb_000926_010 Hb_000556_170 Hb_000556_170 Hb_005542_050--Hb_000556_170 Hb_010417_070 Hb_010417_070 Hb_005542_050--Hb_010417_070 Hb_002477_250 Hb_002477_250 Hb_005542_050--Hb_002477_250 Hb_010661_020--Hb_000926_010 Hb_002282_060 Hb_002282_060 Hb_010661_020--Hb_002282_060 Hb_155159_010 Hb_155159_010 Hb_010661_020--Hb_155159_010 Hb_001231_090 Hb_001231_090 Hb_010661_020--Hb_001231_090 Hb_005539_040 Hb_005539_040 Hb_010661_020--Hb_005539_040 Hb_002325_040--Hb_002477_250 Hb_001135_120 Hb_001135_120 Hb_002325_040--Hb_001135_120 Hb_140049_040 Hb_140049_040 Hb_002325_040--Hb_140049_040 Hb_184798_080 Hb_184798_080 Hb_002325_040--Hb_184798_080 Hb_001147_110 Hb_001147_110 Hb_002325_040--Hb_001147_110 Hb_000723_110 Hb_000723_110 Hb_000926_010--Hb_000723_110 Hb_000023_320 Hb_000023_320 Hb_000926_010--Hb_000023_320 Hb_029695_020 Hb_029695_020 Hb_000926_010--Hb_029695_020 Hb_000264_080 Hb_000264_080 Hb_000926_010--Hb_000264_080 Hb_000640_310 Hb_000640_310 Hb_000556_170--Hb_000640_310 Hb_000236_470 Hb_000236_470 Hb_000556_170--Hb_000236_470 Hb_003633_070 Hb_003633_070 Hb_000556_170--Hb_003633_070 Hb_001799_050 Hb_001799_050 Hb_000556_170--Hb_001799_050 Hb_000556_170--Hb_140049_040 Hb_004480_040 Hb_004480_040 Hb_000556_170--Hb_004480_040 Hb_005389_160 Hb_005389_160 Hb_010417_070--Hb_005389_160 Hb_060094_020 Hb_060094_020 Hb_010417_070--Hb_060094_020 Hb_003866_080 Hb_003866_080 Hb_010417_070--Hb_003866_080 Hb_001534_210 Hb_001534_210 Hb_010417_070--Hb_001534_210 Hb_004410_070 Hb_004410_070 Hb_010417_070--Hb_004410_070 Hb_002085_030 Hb_002085_030 Hb_010417_070--Hb_002085_030 Hb_000809_160 Hb_000809_160 Hb_002477_250--Hb_000809_160 Hb_001754_030 Hb_001754_030 Hb_002477_250--Hb_001754_030 Hb_003470_030 Hb_003470_030 Hb_002477_250--Hb_003470_030 Hb_000264_070 Hb_000264_070 Hb_002477_250--Hb_000264_070 Hb_002477_250--Hb_001135_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.1777 22.1034 13.4044 8.09505 10.975 11.275
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.47039 6.09849 4.84684 12.1593 8.54079

CAGE analysis