Hb_000264_080

Information

Type -
Description -
Location Contig264: 69423-77840
Sequence    

Annotation

kegg
ID rcu:RCOM_0935770
description double-stranded RNA binding protein, putative
nr
ID KDP20941.1
description hypothetical protein JCGZ_21412 [Jatropha curcas]
swissprot
ID Q5YDB6
description RNA polymerase II C-terminal domain phosphatase-like 1 OS=Arabidopsis thaliana GN=CPL1 PE=1 SV=1
trembl
ID A0A067JAV3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21412 PE=4 SV=1
Gene Ontology
ID GO:0005515
description rna polymerase ii c-terminal domain phosphatase-like 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27588: 69397-73777 , PASA_asmbl_27589: 74693-74959 , PASA_asmbl_27590: 75206-77408
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000264_080 0.0 - - hypothetical protein JCGZ_21412 [Jatropha curcas]
2 Hb_000926_010 0.0697423738 - - PREDICTED: uncharacterized protein LOC105632975 [Jatropha curcas]
3 Hb_000061_490 0.0734796301 - - hypothetical protein CISIN_1g0362002mg, partial [Citrus sinensis]
4 Hb_000227_310 0.0737918002 - - PREDICTED: cyclin-T1-4-like isoform X2 [Jatropha curcas]
5 Hb_004410_070 0.0739250235 - - PREDICTED: protein LTV1 homolog [Jatropha curcas]
6 Hb_000336_110 0.0762351467 - - Uracil phosphoribosyltransferase, putative [Ricinus communis]
7 Hb_007017_070 0.0779242487 - - PREDICTED: phospholipid-transporting ATPase 3 isoform X1 [Jatropha curcas]
8 Hb_056987_010 0.0785836722 - - DNA-damage-repair/toleration protein DRT111, chloroplastic [Glycine soja]
9 Hb_000120_420 0.0792573914 - - PREDICTED: AT-rich interactive domain-containing protein 5-like [Jatropha curcas]
10 Hb_000363_280 0.0825527328 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: angiomotin [Cucumis sativus]
11 Hb_002666_080 0.0832506077 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
12 Hb_118840_050 0.0841999138 - - hypothetical protein CISIN_1g0019781mg, partial [Citrus sinensis]
13 Hb_005542_050 0.0844569235 - - PREDICTED: LOW QUALITY PROTEIN: probable inactive serine/threonine-protein kinase scy1 [Prunus mume]
14 Hb_000958_150 0.0857918135 - - Actin, putative [Ricinus communis]
15 Hb_009780_100 0.0860844485 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1-like [Jatropha curcas]
16 Hb_003470_030 0.0881204163 - - PREDICTED: E3 ubiquitin-protein ligase RNF126-like [Jatropha curcas]
17 Hb_000723_110 0.0889173488 - - PREDICTED: TSL-kinase interacting protein 1 [Jatropha curcas]
18 Hb_030545_030 0.0893602512 - - PREDICTED: uncharacterized protein LOC105648743 [Jatropha curcas]
19 Hb_010661_020 0.0895355273 - - PREDICTED: uncharacterized protein LOC105630767 isoform X1 [Jatropha curcas]
20 Hb_002325_040 0.0896044741 - - PREDICTED: uncharacterized protein LOC105645422 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000264_080 Hb_000264_080 Hb_000926_010 Hb_000926_010 Hb_000264_080--Hb_000926_010 Hb_000061_490 Hb_000061_490 Hb_000264_080--Hb_000061_490 Hb_000227_310 Hb_000227_310 Hb_000264_080--Hb_000227_310 Hb_004410_070 Hb_004410_070 Hb_000264_080--Hb_004410_070 Hb_000336_110 Hb_000336_110 Hb_000264_080--Hb_000336_110 Hb_007017_070 Hb_007017_070 Hb_000264_080--Hb_007017_070 Hb_000723_110 Hb_000723_110 Hb_000926_010--Hb_000723_110 Hb_000023_320 Hb_000023_320 Hb_000926_010--Hb_000023_320 Hb_005542_050 Hb_005542_050 Hb_000926_010--Hb_005542_050 Hb_010661_020 Hb_010661_020 Hb_000926_010--Hb_010661_020 Hb_029695_020 Hb_029695_020 Hb_000926_010--Hb_029695_020 Hb_007894_130 Hb_007894_130 Hb_000061_490--Hb_007894_130 Hb_004371_010 Hb_004371_010 Hb_000061_490--Hb_004371_010 Hb_000061_490--Hb_004410_070 Hb_009780_100 Hb_009780_100 Hb_000061_490--Hb_009780_100 Hb_009771_100 Hb_009771_100 Hb_000061_490--Hb_009771_100 Hb_000227_310--Hb_007017_070 Hb_030545_030 Hb_030545_030 Hb_000227_310--Hb_030545_030 Hb_000227_310--Hb_000926_010 Hb_007576_220 Hb_007576_220 Hb_000227_310--Hb_007576_220 Hb_004195_120 Hb_004195_120 Hb_000227_310--Hb_004195_120 Hb_004410_070--Hb_007017_070 Hb_004410_070--Hb_000723_110 Hb_002542_130 Hb_002542_130 Hb_004410_070--Hb_002542_130 Hb_000700_060 Hb_000700_060 Hb_004410_070--Hb_000700_060 Hb_010417_070 Hb_010417_070 Hb_004410_070--Hb_010417_070 Hb_000069_130 Hb_000069_130 Hb_004410_070--Hb_000069_130 Hb_000363_280 Hb_000363_280 Hb_000336_110--Hb_000363_280 Hb_000120_420 Hb_000120_420 Hb_000336_110--Hb_000120_420 Hb_000336_110--Hb_009771_100 Hb_167381_020 Hb_167381_020 Hb_000336_110--Hb_167381_020 Hb_000069_590 Hb_000069_590 Hb_000336_110--Hb_000069_590 Hb_007017_070--Hb_000723_110 Hb_007017_070--Hb_030545_030 Hb_102438_030 Hb_102438_030 Hb_007017_070--Hb_102438_030 Hb_002903_140 Hb_002903_140 Hb_007017_070--Hb_002903_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.2515 18.8057 10.86 7.37295 8.52818 9.56373
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.72824 4.12675 3.32666 7.449 3.61846

CAGE analysis