Hb_000336_110

Information

Type -
Description -
Location Contig336: 180088-200218
Sequence    

Annotation

kegg
ID rcu:RCOM_1677750
description Uracil phosphoribosyltransferase, putative (EC:2.4.2.9 2.7.1.48)
nr
ID XP_002509535.1
description Uracil phosphoribosyltransferase, putative [Ricinus communis]
swissprot
ID Q9FKS0
description Uridine kinase-like protein 1, chloroplastic OS=Arabidopsis thaliana GN=UKL1 PE=1 SV=1
trembl
ID B9RBK1
description Uridine kinase OS=Ricinus communis GN=RCOM_1677750 PE=3 SV=1
Gene Ontology
ID GO:0004849
description uridine kinase-like protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35154: 180371-190069 , PASA_asmbl_35155: 187015-187375 , PASA_asmbl_35156: 197677-199257
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000336_110 0.0 - - Uracil phosphoribosyltransferase, putative [Ricinus communis]
2 Hb_000264_080 0.0762351467 - - hypothetical protein JCGZ_21412 [Jatropha curcas]
3 Hb_000363_280 0.0805065387 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: angiomotin [Cucumis sativus]
4 Hb_000120_420 0.089950867 - - PREDICTED: AT-rich interactive domain-containing protein 5-like [Jatropha curcas]
5 Hb_009771_100 0.0920903451 - - PREDICTED: uncharacterized protein LOC105141784 [Populus euphratica]
6 Hb_167381_020 0.0922751124 - - PREDICTED: uncharacterized protein LOC105650634 [Jatropha curcas]
7 Hb_000069_590 0.0933924664 - - auxin-responsive GH3 family protein [Hevea brasiliensis]
8 Hb_003228_030 0.095246658 - - PREDICTED: transmembrane and coiled-coil domain-containing protein 1 [Jatropha curcas]
9 Hb_002666_080 0.0963246222 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
10 Hb_011909_060 0.0964538002 - - PREDICTED: zinc finger protein CONSTANS-LIKE 1 [Jatropha curcas]
11 Hb_000735_050 0.0979791047 - - PREDICTED: E3 ubiquitin-protein ligase CHIP [Jatropha curcas]
12 Hb_031711_010 0.0997548231 - - PREDICTED: CDPK-related kinase 4-like isoform X1 [Jatropha curcas]
13 Hb_031527_090 0.1001476488 transcription factor TF Family: MYB-related PREDICTED: protein REVEILLE 1 isoform X2 [Jatropha curcas]
14 Hb_003430_030 0.1009806797 - - PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp31 [Jatropha curcas]
15 Hb_000926_010 0.1019703422 - - PREDICTED: uncharacterized protein LOC105632975 [Jatropha curcas]
16 Hb_000230_430 0.102035978 - - catalytic, putative [Ricinus communis]
17 Hb_000625_120 0.1021536936 - - PREDICTED: calcium-dependent protein kinase 28 [Jatropha curcas]
18 Hb_000173_150 0.1026448382 - - PREDICTED: transmembrane protein 64 [Jatropha curcas]
19 Hb_000227_310 0.1045913425 - - PREDICTED: cyclin-T1-4-like isoform X2 [Jatropha curcas]
20 Hb_009780_100 0.1051685478 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_000336_110 Hb_000336_110 Hb_000264_080 Hb_000264_080 Hb_000336_110--Hb_000264_080 Hb_000363_280 Hb_000363_280 Hb_000336_110--Hb_000363_280 Hb_000120_420 Hb_000120_420 Hb_000336_110--Hb_000120_420 Hb_009771_100 Hb_009771_100 Hb_000336_110--Hb_009771_100 Hb_167381_020 Hb_167381_020 Hb_000336_110--Hb_167381_020 Hb_000069_590 Hb_000069_590 Hb_000336_110--Hb_000069_590 Hb_000926_010 Hb_000926_010 Hb_000264_080--Hb_000926_010 Hb_000061_490 Hb_000061_490 Hb_000264_080--Hb_000061_490 Hb_000227_310 Hb_000227_310 Hb_000264_080--Hb_000227_310 Hb_004410_070 Hb_004410_070 Hb_000264_080--Hb_004410_070 Hb_007017_070 Hb_007017_070 Hb_000264_080--Hb_007017_070 Hb_011909_060 Hb_011909_060 Hb_000363_280--Hb_011909_060 Hb_000363_280--Hb_000120_420 Hb_003430_030 Hb_003430_030 Hb_000363_280--Hb_003430_030 Hb_005054_190 Hb_005054_190 Hb_000363_280--Hb_005054_190 Hb_000363_280--Hb_000264_080 Hb_000120_420--Hb_011909_060 Hb_000120_420--Hb_000227_310 Hb_000120_420--Hb_000264_080 Hb_000120_420--Hb_167381_020 Hb_000120_420--Hb_003430_030 Hb_031711_010 Hb_031711_010 Hb_009771_100--Hb_031711_010 Hb_009780_100 Hb_009780_100 Hb_009771_100--Hb_009780_100 Hb_009771_100--Hb_011909_060 Hb_001141_370 Hb_001141_370 Hb_009771_100--Hb_001141_370 Hb_000457_050 Hb_000457_050 Hb_009771_100--Hb_000457_050 Hb_009771_100--Hb_000061_490 Hb_001307_010 Hb_001307_010 Hb_167381_020--Hb_001307_010 Hb_000116_510 Hb_000116_510 Hb_167381_020--Hb_000116_510 Hb_118840_050 Hb_118840_050 Hb_167381_020--Hb_118840_050 Hb_167381_020--Hb_011909_060 Hb_000735_050 Hb_000735_050 Hb_000069_590--Hb_000735_050 Hb_000186_330 Hb_000186_330 Hb_000069_590--Hb_000186_330 Hb_000230_430 Hb_000230_430 Hb_000069_590--Hb_000230_430 Hb_003994_140 Hb_003994_140 Hb_000069_590--Hb_003994_140 Hb_000718_070 Hb_000718_070 Hb_000069_590--Hb_000718_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.77836 14.1831 9.8337 6.03846 8.65402 6.87865
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.73362 2.9801 2.08893 4.24158 1.96899

CAGE analysis