Hb_000116_510

Information

Type -
Description -
Location Contig116: 433405-438061
Sequence    

Annotation

kegg
ID pmum:103340473
description RNA-binding protein 24-A-like
nr
ID XP_012087582.1
description PREDICTED: RNA-binding protein 24-A-like isoform X2 [Jatropha curcas]
swissprot
ID Q9M1S3
description Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana GN=ARP1 PE=2 SV=1
trembl
ID A0A067JM07
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24300 PE=4 SV=1
Gene Ontology
ID GO:0000166
description rna-binding protein 24-a-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04896: 433349-437948 , PASA_asmbl_04897: 435554-437409 , PASA_asmbl_04899: 437323-437824
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000116_510 0.0 - - PREDICTED: RNA-binding protein 24-A-like isoform X2 [Jatropha curcas]
2 Hb_167381_020 0.0862163144 - - PREDICTED: uncharacterized protein LOC105650634 [Jatropha curcas]
3 Hb_000024_120 0.08660491 - - PREDICTED: uncharacterized protein LOC105122546 isoform X1 [Populus euphratica]
4 Hb_008406_040 0.0880252926 - - -
5 Hb_000345_490 0.096168834 - - PREDICTED: mitochondrial Rho GTPase 1-like [Jatropha curcas]
6 Hb_009449_090 0.1026414447 - - PREDICTED: RNA-binding protein 25 isoform X1 [Jatropha curcas]
7 Hb_001454_220 0.1051288308 - - PREDICTED: ubiquitin-like-specific protease ESD4 [Jatropha curcas]
8 Hb_002902_020 0.1081459016 - - PREDICTED: uncharacterized protein LOC105639827 [Jatropha curcas]
9 Hb_118840_050 0.1087523227 - - hypothetical protein CISIN_1g0019781mg, partial [Citrus sinensis]
10 Hb_000120_420 0.1097028515 - - PREDICTED: AT-rich interactive domain-containing protein 5-like [Jatropha curcas]
11 Hb_003430_030 0.1118504598 - - PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp31 [Jatropha curcas]
12 Hb_001307_010 0.1144524423 - - PREDICTED: uncharacterized protein LOC103939917 [Pyrus x bretschneideri]
13 Hb_000062_470 0.1155053478 - - PREDICTED: cyclin-dependent kinase G-2 [Jatropha curcas]
14 Hb_000230_430 0.1162016905 - - catalytic, putative [Ricinus communis]
15 Hb_000336_110 0.1164795351 - - Uracil phosphoribosyltransferase, putative [Ricinus communis]
16 Hb_002739_130 0.1166827112 - - PREDICTED: pre-mRNA-splicing factor 38B-like [Populus euphratica]
17 Hb_000173_150 0.1192304858 - - PREDICTED: transmembrane protein 64 [Jatropha curcas]
18 Hb_000023_320 0.12069849 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000422_110 0.1216233192 - - PREDICTED: uncharacterized protein At1g08160-like [Jatropha curcas]
20 Hb_007576_220 0.1227700304 - - PREDICTED: kanadaptin [Jatropha curcas]

Gene co-expression network

sample Hb_000116_510 Hb_000116_510 Hb_167381_020 Hb_167381_020 Hb_000116_510--Hb_167381_020 Hb_000024_120 Hb_000024_120 Hb_000116_510--Hb_000024_120 Hb_008406_040 Hb_008406_040 Hb_000116_510--Hb_008406_040 Hb_000345_490 Hb_000345_490 Hb_000116_510--Hb_000345_490 Hb_009449_090 Hb_009449_090 Hb_000116_510--Hb_009449_090 Hb_001454_220 Hb_001454_220 Hb_000116_510--Hb_001454_220 Hb_001307_010 Hb_001307_010 Hb_167381_020--Hb_001307_010 Hb_000120_420 Hb_000120_420 Hb_167381_020--Hb_000120_420 Hb_118840_050 Hb_118840_050 Hb_167381_020--Hb_118840_050 Hb_000336_110 Hb_000336_110 Hb_167381_020--Hb_000336_110 Hb_011909_060 Hb_011909_060 Hb_167381_020--Hb_011909_060 Hb_000024_120--Hb_000345_490 Hb_005610_080 Hb_005610_080 Hb_000024_120--Hb_005610_080 Hb_000024_120--Hb_009449_090 Hb_005054_190 Hb_005054_190 Hb_000024_120--Hb_005054_190 Hb_003430_030 Hb_003430_030 Hb_000024_120--Hb_003430_030 Hb_013749_020 Hb_013749_020 Hb_008406_040--Hb_013749_020 Hb_008406_040--Hb_000120_420 Hb_008406_040--Hb_167381_020 Hb_000227_310 Hb_000227_310 Hb_008406_040--Hb_000227_310 Hb_008406_040--Hb_118840_050 Hb_000345_490--Hb_005610_080 Hb_002902_020 Hb_002902_020 Hb_000345_490--Hb_002902_020 Hb_000345_490--Hb_001454_220 Hb_000625_120 Hb_000625_120 Hb_000345_490--Hb_000625_120 Hb_000345_490--Hb_005054_190 Hb_007576_220 Hb_007576_220 Hb_009449_090--Hb_007576_220 Hb_005539_040 Hb_005539_040 Hb_009449_090--Hb_005539_040 Hb_000086_050 Hb_000086_050 Hb_009449_090--Hb_000086_050 Hb_002571_030 Hb_002571_030 Hb_009449_090--Hb_002571_030 Hb_007283_030 Hb_007283_030 Hb_009449_090--Hb_007283_030 Hb_001454_220--Hb_000024_120 Hb_002073_280 Hb_002073_280 Hb_001454_220--Hb_002073_280 Hb_001454_220--Hb_002902_020 Hb_000230_430 Hb_000230_430 Hb_001454_220--Hb_000230_430 Hb_001454_220--Hb_007576_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
25.5888 44.2183 29.8022 16.0891 39.5299 22.3861
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.94964 8.30425 2.30804 13.5427 13.9506

CAGE analysis