Hb_008406_040

Information

Type -
Description -
Location Contig8406: 33234-49593
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60102: 34594-35091 , PASA_asmbl_60103: 33710-37607 , PASA_asmbl_60104: 38615-41506 , PASA_asmbl_60105: 39627-39789
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008406_040 0.0 - - -
2 Hb_013749_020 0.0831962722 - - PREDICTED: inositol phosphorylceramide glucuronosyltransferase 1 [Jatropha curcas]
3 Hb_000116_510 0.0880252926 - - PREDICTED: RNA-binding protein 24-A-like isoform X2 [Jatropha curcas]
4 Hb_000120_420 0.0928883954 - - PREDICTED: AT-rich interactive domain-containing protein 5-like [Jatropha curcas]
5 Hb_167381_020 0.0949377713 - - PREDICTED: uncharacterized protein LOC105650634 [Jatropha curcas]
6 Hb_000227_310 0.0950418357 - - PREDICTED: cyclin-T1-4-like isoform X2 [Jatropha curcas]
7 Hb_118840_050 0.0957536853 - - hypothetical protein CISIN_1g0019781mg, partial [Citrus sinensis]
8 Hb_007576_220 0.099771702 - - PREDICTED: kanadaptin [Jatropha curcas]
9 Hb_002073_280 0.1029545157 - - PREDICTED: phospholipid-transporting ATPase 3 isoform X1 [Jatropha curcas]
10 Hb_000218_020 0.1040600451 - - synaptosomal associated protein, putative [Ricinus communis]
11 Hb_102438_030 0.1042851413 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 37-like isoform X1 [Jatropha curcas]
12 Hb_012114_050 0.1059673669 - - PREDICTED: uncharacterized protein LOC105645815 isoform X1 [Jatropha curcas]
13 Hb_009449_090 0.1094797546 - - PREDICTED: RNA-binding protein 25 isoform X1 [Jatropha curcas]
14 Hb_000264_080 0.1115927207 - - hypothetical protein JCGZ_21412 [Jatropha curcas]
15 Hb_000958_150 0.1122572573 - - Actin, putative [Ricinus communis]
16 Hb_030545_030 0.1143425421 - - PREDICTED: uncharacterized protein LOC105648743 [Jatropha curcas]
17 Hb_029695_020 0.1146391752 - - PREDICTED: inactive beta-amylase 4, chloroplastic [Jatropha curcas]
18 Hb_001454_220 0.1147731243 - - PREDICTED: ubiquitin-like-specific protease ESD4 [Jatropha curcas]
19 Hb_000422_110 0.1148448944 - - PREDICTED: uncharacterized protein At1g08160-like [Jatropha curcas]
20 Hb_000700_060 0.1157855025 - - PREDICTED: uncharacterized protein LOC105644416 [Jatropha curcas]

Gene co-expression network

sample Hb_008406_040 Hb_008406_040 Hb_013749_020 Hb_013749_020 Hb_008406_040--Hb_013749_020 Hb_000116_510 Hb_000116_510 Hb_008406_040--Hb_000116_510 Hb_000120_420 Hb_000120_420 Hb_008406_040--Hb_000120_420 Hb_167381_020 Hb_167381_020 Hb_008406_040--Hb_167381_020 Hb_000227_310 Hb_000227_310 Hb_008406_040--Hb_000227_310 Hb_118840_050 Hb_118840_050 Hb_008406_040--Hb_118840_050 Hb_000422_110 Hb_000422_110 Hb_013749_020--Hb_000422_110 Hb_002073_280 Hb_002073_280 Hb_013749_020--Hb_002073_280 Hb_000544_060 Hb_000544_060 Hb_013749_020--Hb_000544_060 Hb_013749_020--Hb_118840_050 Hb_000661_200 Hb_000661_200 Hb_013749_020--Hb_000661_200 Hb_000116_510--Hb_167381_020 Hb_000024_120 Hb_000024_120 Hb_000116_510--Hb_000024_120 Hb_000345_490 Hb_000345_490 Hb_000116_510--Hb_000345_490 Hb_009449_090 Hb_009449_090 Hb_000116_510--Hb_009449_090 Hb_001454_220 Hb_001454_220 Hb_000116_510--Hb_001454_220 Hb_011909_060 Hb_011909_060 Hb_000120_420--Hb_011909_060 Hb_000363_280 Hb_000363_280 Hb_000120_420--Hb_000363_280 Hb_000120_420--Hb_000227_310 Hb_000264_080 Hb_000264_080 Hb_000120_420--Hb_000264_080 Hb_000120_420--Hb_167381_020 Hb_003430_030 Hb_003430_030 Hb_000120_420--Hb_003430_030 Hb_001307_010 Hb_001307_010 Hb_167381_020--Hb_001307_010 Hb_167381_020--Hb_118840_050 Hb_000336_110 Hb_000336_110 Hb_167381_020--Hb_000336_110 Hb_167381_020--Hb_011909_060 Hb_007017_070 Hb_007017_070 Hb_000227_310--Hb_007017_070 Hb_030545_030 Hb_030545_030 Hb_000227_310--Hb_030545_030 Hb_000926_010 Hb_000926_010 Hb_000227_310--Hb_000926_010 Hb_000227_310--Hb_000264_080 Hb_007576_220 Hb_007576_220 Hb_000227_310--Hb_007576_220 Hb_004195_120 Hb_004195_120 Hb_000227_310--Hb_004195_120 Hb_000917_160 Hb_000917_160 Hb_118840_050--Hb_000917_160 Hb_000191_130 Hb_000191_130 Hb_118840_050--Hb_000191_130 Hb_000062_470 Hb_000062_470 Hb_118840_050--Hb_000062_470 Hb_000577_030 Hb_000577_030 Hb_118840_050--Hb_000577_030 Hb_000230_430 Hb_000230_430 Hb_118840_050--Hb_000230_430 Hb_001047_200 Hb_001047_200 Hb_118840_050--Hb_001047_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.02106 19.32 9.64021 6.62196 13.2929 6.61209
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.64625 3.57785 1.53182 7.38894 4.16707

CAGE analysis