Hb_011909_060

Information

Type -
Description -
Location Contig11909: 65050-66443
Sequence    

Annotation

kegg
ID pop:POPTR_0001s41970g
description hypothetical protein
nr
ID XP_012070683.1
description PREDICTED: zinc finger protein CONSTANS-LIKE 1 [Jatropha curcas]
swissprot
ID Q9LJB7
description B-box zinc finger protein 32 OS=Arabidopsis thaliana GN=BBX32 PE=1 SV=1
trembl
ID A0A067KVE4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00725 PE=4 SV=1
Gene Ontology
ID GO:0005622
description transcription initiation factor tfiid subunit 11-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05627: 65047-66405
cDNA
(Sanger)
(ID:Location)		 020_K21.ab1: 65047-65730 , 027_F12.ab1: 65059-65688 , 042_B10.ab1: 65059-65959 , 044_A13.ab1: 65047-66033

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011909_060 0.0 - - PREDICTED: zinc finger protein CONSTANS-LIKE 1 [Jatropha curcas]
2 Hb_000363_280 0.0561955418 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: angiomotin [Cucumis sativus]
3 Hb_000120_420 0.0667604031 - - PREDICTED: AT-rich interactive domain-containing protein 5-like [Jatropha curcas]
4 Hb_009771_100 0.0729733311 - - PREDICTED: uncharacterized protein LOC105141784 [Populus euphratica]
5 Hb_031711_010 0.0870026025 - - PREDICTED: CDPK-related kinase 4-like isoform X1 [Jatropha curcas]
6 Hb_001141_370 0.091130519 - - PREDICTED: uncharacterized protein LOC105631986 [Jatropha curcas]
7 Hb_002997_160 0.0934262643 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 5 isoform X2 [Jatropha curcas]
8 Hb_167381_020 0.0940038028 - - PREDICTED: uncharacterized protein LOC105650634 [Jatropha curcas]
9 Hb_000336_110 0.0964538002 - - Uracil phosphoribosyltransferase, putative [Ricinus communis]
10 Hb_003430_030 0.0975387017 - - PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp31 [Jatropha curcas]
11 Hb_000264_080 0.097604571 - - hypothetical protein JCGZ_21412 [Jatropha curcas]
12 Hb_007193_110 0.1017418053 - - PREDICTED: E3 ubiquitin-protein ligase RNF14 [Jatropha curcas]
13 Hb_018301_010 0.1017824423 - - PREDICTED: putative receptor-like protein kinase At4g00960 [Jatropha curcas]
14 Hb_000034_160 0.1018948111 - - hypothetical protein EUGRSUZ_F02151 [Eucalyptus grandis]
15 Hb_000061_490 0.1021797666 - - hypothetical protein CISIN_1g0362002mg, partial [Citrus sinensis]
16 Hb_000283_130 0.1027658892 - - PREDICTED: PRA1 family protein E-like [Populus euphratica]
17 Hb_000625_120 0.1039237053 - - PREDICTED: calcium-dependent protein kinase 28 [Jatropha curcas]
18 Hb_000227_310 0.1057317977 - - PREDICTED: cyclin-T1-4-like isoform X2 [Jatropha curcas]
19 Hb_001231_030 0.1058247511 - - PREDICTED: zinc finger BED domain-containing protein DAYSLEEPER-like [Jatropha curcas]
20 Hb_002902_020 0.1059607874 - - PREDICTED: uncharacterized protein LOC105639827 [Jatropha curcas]

Gene co-expression network

sample Hb_011909_060 Hb_011909_060 Hb_000363_280 Hb_000363_280 Hb_011909_060--Hb_000363_280 Hb_000120_420 Hb_000120_420 Hb_011909_060--Hb_000120_420 Hb_009771_100 Hb_009771_100 Hb_011909_060--Hb_009771_100 Hb_031711_010 Hb_031711_010 Hb_011909_060--Hb_031711_010 Hb_001141_370 Hb_001141_370 Hb_011909_060--Hb_001141_370 Hb_002997_160 Hb_002997_160 Hb_011909_060--Hb_002997_160 Hb_000363_280--Hb_000120_420 Hb_003430_030 Hb_003430_030 Hb_000363_280--Hb_003430_030 Hb_000336_110 Hb_000336_110 Hb_000363_280--Hb_000336_110 Hb_005054_190 Hb_005054_190 Hb_000363_280--Hb_005054_190 Hb_000264_080 Hb_000264_080 Hb_000363_280--Hb_000264_080 Hb_000227_310 Hb_000227_310 Hb_000120_420--Hb_000227_310 Hb_000120_420--Hb_000264_080 Hb_167381_020 Hb_167381_020 Hb_000120_420--Hb_167381_020 Hb_000120_420--Hb_003430_030 Hb_009771_100--Hb_031711_010 Hb_009780_100 Hb_009780_100 Hb_009771_100--Hb_009780_100 Hb_009771_100--Hb_001141_370 Hb_000457_050 Hb_000457_050 Hb_009771_100--Hb_000457_050 Hb_000061_490 Hb_000061_490 Hb_009771_100--Hb_000061_490 Hb_000230_430 Hb_000230_430 Hb_031711_010--Hb_000230_430 Hb_031711_010--Hb_000457_050 Hb_001243_060 Hb_001243_060 Hb_031711_010--Hb_001243_060 Hb_007193_110 Hb_007193_110 Hb_031711_010--Hb_007193_110 Hb_000544_060 Hb_000544_060 Hb_001141_370--Hb_000544_060 Hb_000236_220 Hb_000236_220 Hb_001141_370--Hb_000236_220 Hb_001141_370--Hb_001243_060 Hb_000340_110 Hb_000340_110 Hb_001141_370--Hb_000340_110 Hb_003858_090 Hb_003858_090 Hb_001141_370--Hb_003858_090 Hb_001231_030 Hb_001231_030 Hb_002997_160--Hb_001231_030 Hb_000753_100 Hb_000753_100 Hb_002997_160--Hb_000753_100 Hb_001117_190 Hb_001117_190 Hb_002997_160--Hb_001117_190 Hb_080147_040 Hb_080147_040 Hb_002997_160--Hb_080147_040 Hb_003929_140 Hb_003929_140 Hb_002997_160--Hb_003929_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
123.191 241.766 108.39 53.112 112.308 120.343
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
51.7974 34.0177 38.6707 45.8614 41.3718

CAGE analysis