Hb_000227_310

Information

Type -
Description -
Location Contig227: 269632-272647
Sequence    

Annotation

kegg
ID pop:POPTR_0008s14990g
description POPTRDRAFT_766332; cyclin T1 family protein
nr
ID XP_012069590.1
description PREDICTED: cyclin-T1-4-like isoform X2 [Jatropha curcas]
swissprot
ID Q2QQS5
description Cyclin-T1-4 OS=Oryza sativa subsp. japonica GN=CYCT1-1 PE=2 SV=1
trembl
ID A0A067L7U1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02147 PE=3 SV=1
Gene Ontology
ID GO:0019901
description cyclin-t1-4-like isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23632: 269705-273540 , PASA_asmbl_23633: 269705-278557
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000227_310 0.0 - - PREDICTED: cyclin-T1-4-like isoform X2 [Jatropha curcas]
2 Hb_007017_070 0.0552599967 - - PREDICTED: phospholipid-transporting ATPase 3 isoform X1 [Jatropha curcas]
3 Hb_030545_030 0.057753405 - - PREDICTED: uncharacterized protein LOC105648743 [Jatropha curcas]
4 Hb_000926_010 0.0725318791 - - PREDICTED: uncharacterized protein LOC105632975 [Jatropha curcas]
5 Hb_000264_080 0.0737918002 - - hypothetical protein JCGZ_21412 [Jatropha curcas]
6 Hb_007576_220 0.0748133246 - - PREDICTED: kanadaptin [Jatropha curcas]
7 Hb_004195_120 0.0750695872 desease resistance Gene Name: NB-ARC Disease resistance protein RGA2, putative [Ricinus communis]
8 Hb_000120_420 0.0751629509 - - PREDICTED: AT-rich interactive domain-containing protein 5-like [Jatropha curcas]
9 Hb_002903_140 0.0758392315 - - PREDICTED: uncharacterized protein LOC105649513 [Jatropha curcas]
10 Hb_102438_030 0.0818844323 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 37-like isoform X1 [Jatropha curcas]
11 Hb_004319_070 0.0829396001 - - hypothetical protein RCOM_0852460 [Ricinus communis]
12 Hb_003992_180 0.083202399 - - PREDICTED: methyl-CpG-binding domain-containing protein 11 isoform X1 [Jatropha curcas]
13 Hb_000723_110 0.0837391647 - - PREDICTED: TSL-kinase interacting protein 1 [Jatropha curcas]
14 Hb_003470_030 0.0846645818 - - PREDICTED: E3 ubiquitin-protein ligase RNF126-like [Jatropha curcas]
15 Hb_002282_060 0.0854852752 transcription factor TF Family: bZIP DNA binding protein, putative [Ricinus communis]
16 Hb_096819_010 0.0860680192 - - PREDICTED: GRIP and coiled-coil domain-containing protein 2 isoform X4 [Jatropha curcas]
17 Hb_004410_070 0.087716032 - - PREDICTED: protein LTV1 homolog [Jatropha curcas]
18 Hb_006132_040 0.0881188258 - - hypothetical protein JCGZ_14390 [Jatropha curcas]
19 Hb_010661_020 0.088893366 - - PREDICTED: uncharacterized protein LOC105630767 isoform X1 [Jatropha curcas]
20 Hb_008165_030 0.089433314 - - PREDICTED: uncharacterized protein LOC105641288 [Jatropha curcas]

Gene co-expression network

sample Hb_000227_310 Hb_000227_310 Hb_007017_070 Hb_007017_070 Hb_000227_310--Hb_007017_070 Hb_030545_030 Hb_030545_030 Hb_000227_310--Hb_030545_030 Hb_000926_010 Hb_000926_010 Hb_000227_310--Hb_000926_010 Hb_000264_080 Hb_000264_080 Hb_000227_310--Hb_000264_080 Hb_007576_220 Hb_007576_220 Hb_000227_310--Hb_007576_220 Hb_004195_120 Hb_004195_120 Hb_000227_310--Hb_004195_120 Hb_004410_070 Hb_004410_070 Hb_007017_070--Hb_004410_070 Hb_000723_110 Hb_000723_110 Hb_007017_070--Hb_000723_110 Hb_007017_070--Hb_030545_030 Hb_102438_030 Hb_102438_030 Hb_007017_070--Hb_102438_030 Hb_002903_140 Hb_002903_140 Hb_007017_070--Hb_002903_140 Hb_030545_030--Hb_002903_140 Hb_030545_030--Hb_102438_030 Hb_008165_030 Hb_008165_030 Hb_030545_030--Hb_008165_030 Hb_096819_010 Hb_096819_010 Hb_030545_030--Hb_096819_010 Hb_000926_010--Hb_000723_110 Hb_000023_320 Hb_000023_320 Hb_000926_010--Hb_000023_320 Hb_005542_050 Hb_005542_050 Hb_000926_010--Hb_005542_050 Hb_010661_020 Hb_010661_020 Hb_000926_010--Hb_010661_020 Hb_029695_020 Hb_029695_020 Hb_000926_010--Hb_029695_020 Hb_000926_010--Hb_000264_080 Hb_000061_490 Hb_000061_490 Hb_000264_080--Hb_000061_490 Hb_000264_080--Hb_004410_070 Hb_000336_110 Hb_000336_110 Hb_000264_080--Hb_000336_110 Hb_000264_080--Hb_007017_070 Hb_009449_090 Hb_009449_090 Hb_007576_220--Hb_009449_090 Hb_007576_230 Hb_007576_230 Hb_007576_220--Hb_007576_230 Hb_155159_010 Hb_155159_010 Hb_007576_220--Hb_155159_010 Hb_005539_040 Hb_005539_040 Hb_007576_220--Hb_005539_040 Hb_000086_050 Hb_000086_050 Hb_007576_220--Hb_000086_050 Hb_002073_280 Hb_002073_280 Hb_007576_220--Hb_002073_280 Hb_002942_110 Hb_002942_110 Hb_004195_120--Hb_002942_110 Hb_005649_090 Hb_005649_090 Hb_004195_120--Hb_005649_090 Hb_003226_110 Hb_003226_110 Hb_004195_120--Hb_003226_110 Hb_004310_040 Hb_004310_040 Hb_004195_120--Hb_004310_040 Hb_004319_070 Hb_004319_070 Hb_004195_120--Hb_004319_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
26.7847 68.4157 40.7595 21.0009 28.5636 23.6692
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.6937 10.0209 9.73659 21.712 16.4589

CAGE analysis