Hb_004310_040

Information

Type -
Description -
Location Contig4310: 27615-33428
Sequence    

Annotation

kegg
ID rcu:RCOM_1608270
description hypothetical protein
nr
ID XP_002511585.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RCZ6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1608270 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42244: 27760-33424
cDNA
(Sanger)
(ID:Location)		 036_G06.ab1: 27760-28529

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004310_040 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002016_060 0.0838206842 - - PREDICTED: uncharacterized protein LOC105642502 [Jatropha curcas]
3 Hb_000866_080 0.0849502078 - - PREDICTED: signal peptide peptidase-like 4 isoform X1 [Jatropha curcas]
4 Hb_004195_120 0.0854224002 desease resistance Gene Name: NB-ARC Disease resistance protein RGA2, putative [Ricinus communis]
5 Hb_010661_020 0.0862759836 - - PREDICTED: uncharacterized protein LOC105630767 isoform X1 [Jatropha curcas]
6 Hb_011249_060 0.0878046508 - - hypothetical protein POPTR_0018s12600g [Populus trichocarpa]
7 Hb_015183_100 0.0898460482 - - PREDICTED: ankyrin repeat-containing protein At3g12360 [Jatropha curcas]
8 Hb_125126_010 0.0938523781 desease resistance Gene Name: NB-ARC resistance family protein [Populus trichocarpa]
9 Hb_155159_010 0.0940926293 - - PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 1 [Jatropha curcas]
10 Hb_011920_020 0.0979797562 - - PREDICTED: uncharacterized protein LOC105645397 [Jatropha curcas]
11 Hb_002005_120 0.0994931648 - - PREDICTED: protein MEI2-like 5 [Jatropha curcas]
12 Hb_005539_040 0.1009044556 - - PREDICTED: RNA-binding protein 25 isoform X3 [Jatropha curcas]
13 Hb_002903_140 0.1028121887 - - PREDICTED: uncharacterized protein LOC105649513 [Jatropha curcas]
14 Hb_000227_310 0.1038442206 - - PREDICTED: cyclin-T1-4-like isoform X2 [Jatropha curcas]
15 Hb_003895_020 0.1044224646 - - PREDICTED: dedicator of cytokinesis protein 7 isoform X2 [Jatropha curcas]
16 Hb_005765_040 0.1045261489 - - transcription elongation factor s-II, putative [Ricinus communis]
17 Hb_000599_130 0.1062486207 - - PREDICTED: U-box domain-containing protein 3 [Jatropha curcas]
18 Hb_000917_100 0.1065622704 - - PREDICTED: phosphoenolpyruvate carboxylase 4 [Jatropha curcas]
19 Hb_001221_090 0.1074066014 - - PREDICTED: uncharacterized protein LOC105640211 isoform X1 [Jatropha curcas]
20 Hb_005542_050 0.1074259797 - - PREDICTED: LOW QUALITY PROTEIN: probable inactive serine/threonine-protein kinase scy1 [Prunus mume]

Gene co-expression network

sample Hb_004310_040 Hb_004310_040 Hb_002016_060 Hb_002016_060 Hb_004310_040--Hb_002016_060 Hb_000866_080 Hb_000866_080 Hb_004310_040--Hb_000866_080 Hb_004195_120 Hb_004195_120 Hb_004310_040--Hb_004195_120 Hb_010661_020 Hb_010661_020 Hb_004310_040--Hb_010661_020 Hb_011249_060 Hb_011249_060 Hb_004310_040--Hb_011249_060 Hb_015183_100 Hb_015183_100 Hb_004310_040--Hb_015183_100 Hb_002016_060--Hb_015183_100 Hb_000917_100 Hb_000917_100 Hb_002016_060--Hb_000917_100 Hb_002005_120 Hb_002005_120 Hb_002016_060--Hb_002005_120 Hb_002016_060--Hb_000866_080 Hb_000059_020 Hb_000059_020 Hb_002016_060--Hb_000059_020 Hb_003895_020 Hb_003895_020 Hb_000866_080--Hb_003895_020 Hb_000866_080--Hb_011249_060 Hb_000866_080--Hb_015183_100 Hb_000300_250 Hb_000300_250 Hb_000866_080--Hb_000300_250 Hb_000866_080--Hb_000917_100 Hb_002942_110 Hb_002942_110 Hb_004195_120--Hb_002942_110 Hb_000227_310 Hb_000227_310 Hb_004195_120--Hb_000227_310 Hb_005649_090 Hb_005649_090 Hb_004195_120--Hb_005649_090 Hb_003226_110 Hb_003226_110 Hb_004195_120--Hb_003226_110 Hb_004319_070 Hb_004319_070 Hb_004195_120--Hb_004319_070 Hb_005542_050 Hb_005542_050 Hb_010661_020--Hb_005542_050 Hb_000926_010 Hb_000926_010 Hb_010661_020--Hb_000926_010 Hb_002282_060 Hb_002282_060 Hb_010661_020--Hb_002282_060 Hb_155159_010 Hb_155159_010 Hb_010661_020--Hb_155159_010 Hb_001231_090 Hb_001231_090 Hb_010661_020--Hb_001231_090 Hb_005539_040 Hb_005539_040 Hb_010661_020--Hb_005539_040 Hb_001427_150 Hb_001427_150 Hb_011249_060--Hb_001427_150 Hb_009302_030 Hb_009302_030 Hb_011249_060--Hb_009302_030 Hb_004899_040 Hb_004899_040 Hb_011249_060--Hb_004899_040 Hb_009486_160 Hb_009486_160 Hb_011249_060--Hb_009486_160 Hb_002903_140 Hb_002903_140 Hb_011249_060--Hb_002903_140 Hb_011249_060--Hb_015183_100 Hb_003142_040 Hb_003142_040 Hb_015183_100--Hb_003142_040 Hb_001171_030 Hb_001171_030 Hb_015183_100--Hb_001171_030 Hb_002968_070 Hb_002968_070 Hb_015183_100--Hb_002968_070 Hb_012940_040 Hb_012940_040 Hb_015183_100--Hb_012940_040 Hb_001341_160 Hb_001341_160 Hb_015183_100--Hb_001341_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.5673 47.6353 19.561 14.4414 12.2931 16.0968
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.169 6.1912 4.82062 22.0824 15.0334

CAGE analysis