Hb_002005_120

Information

Type -
Description -
Location Contig2005: 110754-118020
Sequence    

Annotation

kegg
ID vvi:100246862
description protein MEI2-like 5
nr
ID XP_012091883.1
description PREDICTED: protein MEI2-like 5 [Jatropha curcas]
swissprot
ID Q6ZI17
description Protein MEI2-like 2 OS=Oryza sativa subsp. japonica GN=ML2 PE=2 SV=1
trembl
ID A0A067JBP2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21668 PE=4 SV=1
Gene Ontology
ID GO:0000166
description protein mei2-like 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20320: 110862-117911 , PASA_asmbl_20321: 112291-112627 , PASA_asmbl_20322: 117416-117606
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002005_120 0.0 - - PREDICTED: protein MEI2-like 5 [Jatropha curcas]
2 Hb_014720_020 0.0712033526 - - PREDICTED: serine/threonine-protein kinase ATM [Jatropha curcas]
3 Hb_065500_030 0.0717536056 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI7 [Jatropha curcas]
4 Hb_000917_100 0.0789460124 - - PREDICTED: phosphoenolpyruvate carboxylase 4 [Jatropha curcas]
5 Hb_003604_050 0.0825434487 - - PREDICTED: MAP3K epsilon protein kinase 1-like isoform X2 [Jatropha curcas]
6 Hb_002016_060 0.087611129 - - PREDICTED: uncharacterized protein LOC105642502 [Jatropha curcas]
7 Hb_003120_070 0.087784669 - - ATP binding protein, putative [Ricinus communis]
8 Hb_000117_070 0.0884440447 - - PREDICTED: branchpoint-bridging protein [Jatropha curcas]
9 Hb_001341_160 0.090385397 - - PREDICTED: E3 SUMO-protein ligase SIZ1 isoform X2 [Jatropha curcas]
10 Hb_002400_140 0.0950213727 - - protein kinase, putative [Ricinus communis]
11 Hb_006907_140 0.09605596 - - conserved hypothetical protein [Ricinus communis]
12 Hb_004223_160 0.0972304476 - - PREDICTED: 5'-3' exoribonuclease 3 isoform X2 [Jatropha curcas]
13 Hb_004310_040 0.0994931648 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002005_030 0.1007964288 - - PREDICTED: uncharacterized protein LOC105649755 [Jatropha curcas]
15 Hb_000836_020 0.1030888342 transcription factor TF Family: SNF2 Chromo domain protein, putative [Ricinus communis]
16 Hb_005832_010 0.1035265498 - - PREDICTED: enhancer of mRNA-decapping protein 4 isoform X1 [Jatropha curcas]
17 Hb_001989_050 0.1041229726 - - PREDICTED: IAA-amino acid hydrolase ILR1-like 5 [Jatropha curcas]
18 Hb_011828_030 0.1049340752 - - ubiquitin protein ligase E3a, putative [Ricinus communis]
19 Hb_000866_080 0.1051207227 - - PREDICTED: signal peptide peptidase-like 4 isoform X1 [Jatropha curcas]
20 Hb_000856_020 0.1054071391 - - PREDICTED: probable beta-1,3-galactosyltransferase 19 [Jatropha curcas]

Gene co-expression network

sample Hb_002005_120 Hb_002005_120 Hb_014720_020 Hb_014720_020 Hb_002005_120--Hb_014720_020 Hb_065500_030 Hb_065500_030 Hb_002005_120--Hb_065500_030 Hb_000917_100 Hb_000917_100 Hb_002005_120--Hb_000917_100 Hb_003604_050 Hb_003604_050 Hb_002005_120--Hb_003604_050 Hb_002016_060 Hb_002016_060 Hb_002005_120--Hb_002016_060 Hb_003120_070 Hb_003120_070 Hb_002005_120--Hb_003120_070 Hb_014720_020--Hb_003120_070 Hb_001221_090 Hb_001221_090 Hb_014720_020--Hb_001221_090 Hb_014720_020--Hb_003604_050 Hb_007818_030 Hb_007818_030 Hb_014720_020--Hb_007818_030 Hb_001904_030 Hb_001904_030 Hb_014720_020--Hb_001904_030 Hb_011828_030 Hb_011828_030 Hb_065500_030--Hb_011828_030 Hb_004162_120 Hb_004162_120 Hb_065500_030--Hb_004162_120 Hb_000836_020 Hb_000836_020 Hb_065500_030--Hb_000836_020 Hb_000117_070 Hb_000117_070 Hb_065500_030--Hb_000117_070 Hb_000599_130 Hb_000599_130 Hb_065500_030--Hb_000599_130 Hb_000866_080 Hb_000866_080 Hb_000917_100--Hb_000866_080 Hb_000917_100--Hb_002016_060 Hb_015183_100 Hb_015183_100 Hb_000917_100--Hb_015183_100 Hb_002092_070 Hb_002092_070 Hb_000917_100--Hb_002092_070 Hb_000917_100--Hb_001221_090 Hb_003604_050--Hb_001904_030 Hb_001341_160 Hb_001341_160 Hb_003604_050--Hb_001341_160 Hb_000479_240 Hb_000479_240 Hb_003604_050--Hb_000479_240 Hb_005832_010 Hb_005832_010 Hb_003604_050--Hb_005832_010 Hb_002928_190 Hb_002928_190 Hb_003604_050--Hb_002928_190 Hb_004785_030 Hb_004785_030 Hb_003604_050--Hb_004785_030 Hb_002016_060--Hb_015183_100 Hb_004310_040 Hb_004310_040 Hb_002016_060--Hb_004310_040 Hb_002016_060--Hb_000866_080 Hb_000059_020 Hb_000059_020 Hb_002016_060--Hb_000059_020 Hb_000751_140 Hb_000751_140 Hb_003120_070--Hb_000751_140 Hb_000526_060 Hb_000526_060 Hb_003120_070--Hb_000526_060 Hb_003120_070--Hb_000117_070 Hb_000197_290 Hb_000197_290 Hb_003120_070--Hb_000197_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.98522 24.8736 6.97153 9.78319 8.97468 9.58953
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.75861 2.22283 2.22613 13.0727 10.1476

CAGE analysis