Hb_000599_130

Information

Type -
Description -
Location Contig599: 89753-93509
Sequence    

Annotation

kegg
ID rcu:RCOM_0499500
description ubiquitin-protein ligase, putative
nr
ID XP_012085304.1
description PREDICTED: U-box domain-containing protein 3 [Jatropha curcas]
swissprot
ID Q8GWV5
description U-box domain-containing protein 3 OS=Arabidopsis thaliana GN=PUB3 PE=2 SV=2
trembl
ID A0A067JRK4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17680 PE=4 SV=1
Gene Ontology
ID GO:0004842
description u-box domain-containing protein 3-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50452: 87529-89994 , PASA_asmbl_50454: 88970-89126 , PASA_asmbl_50455: 90480-90807 , PASA_asmbl_50456: 91584-93472
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000599_130 0.0 - - PREDICTED: U-box domain-containing protein 3 [Jatropha curcas]
2 Hb_000175_350 0.0682071442 - - phopholipase d alpha, putative [Ricinus communis]
3 Hb_001369_770 0.1016876136 - - PREDICTED: AT-hook motif nuclear-localized protein 6-like [Jatropha curcas]
4 Hb_018301_010 0.1028089315 - - PREDICTED: putative receptor-like protein kinase At4g00960 [Jatropha curcas]
5 Hb_002942_110 0.1056591501 transcription factor TF Family: ARF PREDICTED: auxin response factor 2-like [Jatropha curcas]
6 Hb_004310_040 0.1062486207 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000120_420 0.1072135934 - - PREDICTED: AT-rich interactive domain-containing protein 5-like [Jatropha curcas]
8 Hb_000123_350 0.1096506417 desease resistance Gene Name: ABC_membrane ABC transporter family protein [Hevea brasiliensis]
9 Hb_065500_030 0.1106130477 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI7 [Jatropha curcas]
10 Hb_000932_070 0.1131218867 - - PREDICTED: asparagine synthetase [glutamine-hydrolyzing] 3 [Jatropha curcas]
11 Hb_004218_090 0.1192162002 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
12 Hb_000979_240 0.119629472 transcription factor TF Family: GRAS PREDICTED: DELLA protein GAIP-B [Jatropha curcas]
13 Hb_004195_120 0.1201645438 desease resistance Gene Name: NB-ARC Disease resistance protein RGA2, putative [Ricinus communis]
14 Hb_000574_420 0.1205344684 - - PREDICTED: zinc finger BED domain-containing protein DAYSLEEPER-like [Jatropha curcas]
15 Hb_002016_060 0.1208114426 - - PREDICTED: uncharacterized protein LOC105642502 [Jatropha curcas]
16 Hb_004162_120 0.1253413395 - - PREDICTED: vacuolar protein sorting-associated protein 41 homolog [Populus euphratica]
17 Hb_000264_080 0.1260909542 - - hypothetical protein JCGZ_21412 [Jatropha curcas]
18 Hb_000117_070 0.1264996063 - - PREDICTED: branchpoint-bridging protein [Jatropha curcas]
19 Hb_000120_520 0.1271370011 - - PREDICTED: plant intracellular Ras-group-related LRR protein 4 [Jatropha curcas]
20 Hb_000896_060 0.1281834342 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000599_130 Hb_000599_130 Hb_000175_350 Hb_000175_350 Hb_000599_130--Hb_000175_350 Hb_001369_770 Hb_001369_770 Hb_000599_130--Hb_001369_770 Hb_018301_010 Hb_018301_010 Hb_000599_130--Hb_018301_010 Hb_002942_110 Hb_002942_110 Hb_000599_130--Hb_002942_110 Hb_004310_040 Hb_004310_040 Hb_000599_130--Hb_004310_040 Hb_000120_420 Hb_000120_420 Hb_000599_130--Hb_000120_420 Hb_000979_240 Hb_000979_240 Hb_000175_350--Hb_000979_240 Hb_178127_010 Hb_178127_010 Hb_000175_350--Hb_178127_010 Hb_000175_350--Hb_000120_420 Hb_005333_030 Hb_005333_030 Hb_000175_350--Hb_005333_030 Hb_000120_520 Hb_000120_520 Hb_000175_350--Hb_000120_520 Hb_001369_770--Hb_002942_110 Hb_000538_190 Hb_000538_190 Hb_001369_770--Hb_000538_190 Hb_020178_050 Hb_020178_050 Hb_001369_770--Hb_020178_050 Hb_004195_120 Hb_004195_120 Hb_001369_770--Hb_004195_120 Hb_005203_020 Hb_005203_020 Hb_001369_770--Hb_005203_020 Hb_006683_040 Hb_006683_040 Hb_018301_010--Hb_006683_040 Hb_004218_090 Hb_004218_090 Hb_018301_010--Hb_004218_090 Hb_012114_050 Hb_012114_050 Hb_018301_010--Hb_012114_050 Hb_000264_080 Hb_000264_080 Hb_018301_010--Hb_000264_080 Hb_018301_010--Hb_000120_420 Hb_007193_110 Hb_007193_110 Hb_018301_010--Hb_007193_110 Hb_002942_110--Hb_004195_120 Hb_002942_110--Hb_020178_050 Hb_128695_030 Hb_128695_030 Hb_002942_110--Hb_128695_030 Hb_004324_060 Hb_004324_060 Hb_002942_110--Hb_004324_060 Hb_003895_020 Hb_003895_020 Hb_002942_110--Hb_003895_020 Hb_002016_060 Hb_002016_060 Hb_004310_040--Hb_002016_060 Hb_000866_080 Hb_000866_080 Hb_004310_040--Hb_000866_080 Hb_004310_040--Hb_004195_120 Hb_010661_020 Hb_010661_020 Hb_004310_040--Hb_010661_020 Hb_011249_060 Hb_011249_060 Hb_004310_040--Hb_011249_060 Hb_015183_100 Hb_015183_100 Hb_004310_040--Hb_015183_100 Hb_011909_060 Hb_011909_060 Hb_000120_420--Hb_011909_060 Hb_000363_280 Hb_000363_280 Hb_000120_420--Hb_000363_280 Hb_000227_310 Hb_000227_310 Hb_000120_420--Hb_000227_310 Hb_000120_420--Hb_000264_080 Hb_167381_020 Hb_167381_020 Hb_000120_420--Hb_167381_020 Hb_003430_030 Hb_003430_030 Hb_000120_420--Hb_003430_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.6546 19.0106 5.23536 5.71742 6.77625 6.69312
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.04856 1.06601 2.40694 7.73502 3.43117

CAGE analysis