Hb_004218_090

Information

Type -
Description -
Location Contig4218: 86111-106064
Sequence    

Annotation

kegg
ID rcu:RCOM_1452990
description leucine-rich repeat-containing protein, putative (EC:3.1.3.16)
nr
ID XP_002513078.1
description leucine-rich repeat-containing protein, putative [Ricinus communis]
swissprot
ID P23799
description Putative adenylate cyclase regulatory protein OS=Trypanosoma brucei brucei GN=ESAG8 PE=2 SV=1
trembl
ID B9RGC6
description Leucine-rich repeat-containing protein, putative OS=Ricinus communis GN=RCOM_1452990 PE=4 SV=1
Gene Ontology
ID GO:0004721
description disease resistance protein rga3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41662: 102146-103023 , PASA_asmbl_41664: 104257-105772
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004218_090 0.0 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
2 Hb_018301_010 0.0749475666 - - PREDICTED: putative receptor-like protein kinase At4g00960 [Jatropha curcas]
3 Hb_127599_010 0.0772548417 - - hypothetical protein CISIN_1g0010462mg, partial [Citrus sinensis]
4 Hb_006683_040 0.0910871642 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
5 Hb_000465_080 0.0986318904 - - PREDICTED: E3 ubiquitin-protein ligase RBBP6-like [Jatropha curcas]
6 Hb_000061_490 0.1018235104 - - hypothetical protein CISIN_1g0362002mg, partial [Citrus sinensis]
7 Hb_000120_420 0.1043377682 - - PREDICTED: AT-rich interactive domain-containing protein 5-like [Jatropha curcas]
8 Hb_005000_300 0.1131361468 transcription factor TF Family: TRAF putative regulatory protein NPR1 [Hevea brasiliensis]
9 Hb_003506_070 0.1145174496 - - PREDICTED: calcineurin B-like protein 7 isoform X2 [Jatropha curcas]
10 Hb_006738_050 0.1149996106 - - PREDICTED: uncharacterized protein LOC105634992 [Jatropha curcas]
11 Hb_012114_050 0.1151813522 - - PREDICTED: uncharacterized protein LOC105645815 isoform X1 [Jatropha curcas]
12 Hb_012226_010 0.1168395321 - - PREDICTED: protein DGCR14 [Jatropha curcas]
13 Hb_000932_070 0.1172724144 - - PREDICTED: asparagine synthetase [glutamine-hydrolyzing] 3 [Jatropha curcas]
14 Hb_000340_110 0.1174557256 - - PREDICTED: mediator of RNA polymerase II transcription subunit 33B isoform X1 [Jatropha curcas]
15 Hb_009771_100 0.119094882 - - PREDICTED: uncharacterized protein LOC105141784 [Populus euphratica]
16 Hb_000599_130 0.1192162002 - - PREDICTED: U-box domain-containing protein 3 [Jatropha curcas]
17 Hb_000264_080 0.1205174836 - - hypothetical protein JCGZ_21412 [Jatropha curcas]
18 Hb_000123_350 0.1206771775 desease resistance Gene Name: ABC_membrane ABC transporter family protein [Hevea brasiliensis]
19 Hb_001231_080 0.1207813085 - - PREDICTED: zinc finger BED domain-containing protein DAYSLEEPER-like isoform X1 [Fragaria vesca subsp. vesca]
20 Hb_000227_310 0.1208455978 - - PREDICTED: cyclin-T1-4-like isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_004218_090 Hb_004218_090 Hb_018301_010 Hb_018301_010 Hb_004218_090--Hb_018301_010 Hb_127599_010 Hb_127599_010 Hb_004218_090--Hb_127599_010 Hb_006683_040 Hb_006683_040 Hb_004218_090--Hb_006683_040 Hb_000465_080 Hb_000465_080 Hb_004218_090--Hb_000465_080 Hb_000061_490 Hb_000061_490 Hb_004218_090--Hb_000061_490 Hb_000120_420 Hb_000120_420 Hb_004218_090--Hb_000120_420 Hb_018301_010--Hb_006683_040 Hb_012114_050 Hb_012114_050 Hb_018301_010--Hb_012114_050 Hb_000264_080 Hb_000264_080 Hb_018301_010--Hb_000264_080 Hb_018301_010--Hb_000120_420 Hb_007193_110 Hb_007193_110 Hb_018301_010--Hb_007193_110 Hb_000062_080 Hb_000062_080 Hb_127599_010--Hb_000062_080 Hb_000169_170 Hb_000169_170 Hb_127599_010--Hb_000169_170 Hb_006738_050 Hb_006738_050 Hb_127599_010--Hb_006738_050 Hb_000700_060 Hb_000700_060 Hb_127599_010--Hb_000700_060 Hb_127599_010--Hb_006683_040 Hb_000932_070 Hb_000932_070 Hb_006683_040--Hb_000932_070 Hb_000340_110 Hb_000340_110 Hb_006683_040--Hb_000340_110 Hb_006683_040--Hb_000061_490 Hb_164010_070 Hb_164010_070 Hb_006683_040--Hb_164010_070 Hb_005000_300 Hb_005000_300 Hb_000465_080--Hb_005000_300 Hb_046117_010 Hb_046117_010 Hb_000465_080--Hb_046117_010 Hb_003506_070 Hb_003506_070 Hb_000465_080--Hb_003506_070 Hb_003120_050 Hb_003120_050 Hb_000465_080--Hb_003120_050 Hb_003078_030 Hb_003078_030 Hb_000465_080--Hb_003078_030 Hb_000061_490--Hb_000264_080 Hb_007894_130 Hb_007894_130 Hb_000061_490--Hb_007894_130 Hb_004371_010 Hb_004371_010 Hb_000061_490--Hb_004371_010 Hb_004410_070 Hb_004410_070 Hb_000061_490--Hb_004410_070 Hb_009780_100 Hb_009780_100 Hb_000061_490--Hb_009780_100 Hb_009771_100 Hb_009771_100 Hb_000061_490--Hb_009771_100 Hb_011909_060 Hb_011909_060 Hb_000120_420--Hb_011909_060 Hb_000363_280 Hb_000363_280 Hb_000120_420--Hb_000363_280 Hb_000227_310 Hb_000227_310 Hb_000120_420--Hb_000227_310 Hb_000120_420--Hb_000264_080 Hb_167381_020 Hb_167381_020 Hb_000120_420--Hb_167381_020 Hb_003430_030 Hb_003430_030 Hb_000120_420--Hb_003430_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.94638 13.1418 3.81421 2.6338 3.84406 3.14039
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.26769 1.573 2.20634 3.57172 1.20125

CAGE analysis