Hb_003120_050

Information

Type -
Description -
Location Contig3120: 19517-23582
Sequence    

Annotation

kegg
ID rcu:RCOM_1598640
description hypothetical protein
nr
ID XP_012073759.1
description PREDICTED: uncharacterized protein LOC105635312 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID E6NTZ5
description JHL20J20.12 protein OS=Jatropha curcas GN=JHL20J20.12 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32998: 19392-20013 , PASA_asmbl_32999: 20237-20639
cDNA
(Sanger)
(ID:Location)		 052_B18.ab1: 21079-21549

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003120_050 0.0 - - PREDICTED: uncharacterized protein LOC105635312 [Jatropha curcas]
2 Hb_000465_080 0.1020709566 - - PREDICTED: E3 ubiquitin-protein ligase RBBP6-like [Jatropha curcas]
3 Hb_001141_360 0.1138540156 - - PREDICTED: FRIGIDA-like protein 4a [Jatropha curcas]
4 Hb_028207_040 0.1193170741 - - PREDICTED: beta-hexosaminidase 2 [Jatropha curcas]
5 Hb_003494_060 0.1212488221 - - PREDICTED: uncharacterized protein LOC105644062 isoform X1 [Jatropha curcas]
6 Hb_001865_060 0.1250629643 - - PREDICTED: uncharacterized protein LOC105647962 [Jatropha curcas]
7 Hb_000084_240 0.1296048132 - - PREDICTED: F-box/kelch-repeat protein At1g57790-like [Jatropha curcas]
8 Hb_002485_040 0.1296270092 - - PREDICTED: uncharacterized protein LOC105637426 [Jatropha curcas]
9 Hb_012082_010 0.133255696 - - PREDICTED: transcription factor GTE4 isoform X1 [Jatropha curcas]
10 Hb_005499_010 0.1335693778 transcription factor TF Family: TRAF Regulatory protein NPR1, putative [Ricinus communis]
11 Hb_000953_050 0.1356079295 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105629451 [Jatropha curcas]
12 Hb_001546_110 0.1356752455 - - PREDICTED: leucine-rich repeat extensin-like protein 3 [Jatropha curcas]
13 Hb_002897_050 0.1403133378 - - PREDICTED: uncharacterized protein LOC105649158 [Jatropha curcas]
14 Hb_002107_060 0.1429429624 - - PREDICTED: uncharacterized protein LOC105635312 [Jatropha curcas]
15 Hb_001489_120 0.1431761887 - - PREDICTED: alpha-amylase 3, chloroplastic [Jatropha curcas]
16 Hb_091226_010 0.144115591 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA isoform X1 [Jatropha curcas]
17 Hb_000062_080 0.1461423466 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR11-like [Jatropha curcas]
18 Hb_001525_010 0.1489984708 - - PREDICTED: uncharacterized protein LOC105638298 [Jatropha curcas]
19 Hb_125126_010 0.1492729451 desease resistance Gene Name: NB-ARC resistance family protein [Populus trichocarpa]
20 Hb_000186_200 0.1493924321 - - PREDICTED: UBA and UBX domain-containing protein At4g15410-like [Populus euphratica]

Gene co-expression network

sample Hb_003120_050 Hb_003120_050 Hb_000465_080 Hb_000465_080 Hb_003120_050--Hb_000465_080 Hb_001141_360 Hb_001141_360 Hb_003120_050--Hb_001141_360 Hb_028207_040 Hb_028207_040 Hb_003120_050--Hb_028207_040 Hb_003494_060 Hb_003494_060 Hb_003120_050--Hb_003494_060 Hb_001865_060 Hb_001865_060 Hb_003120_050--Hb_001865_060 Hb_000084_240 Hb_000084_240 Hb_003120_050--Hb_000084_240 Hb_005000_300 Hb_005000_300 Hb_000465_080--Hb_005000_300 Hb_004218_090 Hb_004218_090 Hb_000465_080--Hb_004218_090 Hb_046117_010 Hb_046117_010 Hb_000465_080--Hb_046117_010 Hb_003506_070 Hb_003506_070 Hb_000465_080--Hb_003506_070 Hb_003078_030 Hb_003078_030 Hb_000465_080--Hb_003078_030 Hb_001141_360--Hb_001865_060 Hb_001141_360--Hb_003494_060 Hb_000062_080 Hb_000062_080 Hb_001141_360--Hb_000062_080 Hb_012725_040 Hb_012725_040 Hb_001141_360--Hb_012725_040 Hb_012226_010 Hb_012226_010 Hb_001141_360--Hb_012226_010 Hb_000953_050 Hb_000953_050 Hb_028207_040--Hb_000953_050 Hb_001525_010 Hb_001525_010 Hb_028207_040--Hb_001525_010 Hb_003078_050 Hb_003078_050 Hb_028207_040--Hb_003078_050 Hb_001369_570 Hb_001369_570 Hb_028207_040--Hb_001369_570 Hb_000069_230 Hb_000069_230 Hb_028207_040--Hb_000069_230 Hb_003494_060--Hb_001865_060 Hb_003494_060--Hb_012725_040 Hb_000483_040 Hb_000483_040 Hb_003494_060--Hb_000483_040 Hb_009838_060 Hb_009838_060 Hb_003494_060--Hb_009838_060 Hb_003494_060--Hb_000062_080 Hb_001865_060--Hb_012725_040 Hb_001865_060--Hb_000062_080 Hb_002485_040 Hb_002485_040 Hb_001865_060--Hb_002485_040 Hb_004032_310 Hb_004032_310 Hb_001865_060--Hb_004032_310 Hb_005499_010 Hb_005499_010 Hb_000084_240--Hb_005499_010 Hb_000186_200 Hb_000186_200 Hb_000084_240--Hb_000186_200 Hb_002897_050 Hb_002897_050 Hb_000084_240--Hb_002897_050 Hb_000045_260 Hb_000045_260 Hb_000084_240--Hb_000045_260 Hb_002107_060 Hb_002107_060 Hb_000084_240--Hb_002107_060 Hb_011631_010 Hb_011631_010 Hb_000084_240--Hb_011631_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.86438 36.9734 9.42227 4.08358 6.30938 4.7111
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.20163 5.98526 4.25964 3.6367 4.911

CAGE analysis