Hb_003078_030

Information

Type -
Description -
Location Contig3078: 39520-45208
Sequence    

Annotation

kegg
ID rcu:RCOM_0379230
description heat shock protein 70 (HSP70)-interacting protein, putative
nr
ID XP_012085129.1
description PREDICTED: E3 ubiquitin-protein ligase CHIP [Jatropha curcas]
swissprot
ID Q9SRS9
description E3 ubiquitin-protein ligase CHIP OS=Arabidopsis thaliana GN=CHIP PE=1 SV=1
trembl
ID A0A067LLN0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15134 PE=4 SV=1
Gene Ontology
ID GO:0004842
description e3 ubiquitin-protein ligase chip

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32507: 39578-45158 , PASA_asmbl_32508: 42722-43174 , PASA_asmbl_32509: 39578-40406 , PASA_asmbl_32511: 39825-40824 , PASA_asmbl_32512: 43803-43987
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003078_030 0.0 - - PREDICTED: E3 ubiquitin-protein ligase CHIP [Jatropha curcas]
2 Hb_000056_300 0.0726084421 - - PREDICTED: probable methyltransferase PMT2 isoform X2 [Jatropha curcas]
3 Hb_000186_200 0.0820868098 - - PREDICTED: UBA and UBX domain-containing protein At4g15410-like [Populus euphratica]
4 Hb_000163_230 0.0915377703 - - Phytochrome A-associated F-box protein, putative [Ricinus communis]
5 Hb_001009_090 0.0923844458 - - CDK protein [Hevea brasiliensis]
6 Hb_005000_300 0.0953181873 transcription factor TF Family: TRAF putative regulatory protein NPR1 [Hevea brasiliensis]
7 Hb_000836_370 0.0958352855 - - PREDICTED: protein REVEILLE 3-like isoform X1 [Jatropha curcas]
8 Hb_000134_340 0.095997528 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 5 [Jatropha curcas]
9 Hb_005054_310 0.0983678212 - - PREDICTED: glycosyltransferase family 64 protein C4 [Jatropha curcas]
10 Hb_000084_240 0.1029541223 - - PREDICTED: F-box/kelch-repeat protein At1g57790-like [Jatropha curcas]
11 Hb_002701_210 0.103241223 - - Protein COBRA precursor, putative [Ricinus communis]
12 Hb_001484_100 0.1062627481 - - PREDICTED: cyanate hydratase [Jatropha curcas]
13 Hb_005649_090 0.1066133975 - - PREDICTED: ninja-family protein AFP3-like [Jatropha curcas]
14 Hb_000465_080 0.1076056566 - - PREDICTED: E3 ubiquitin-protein ligase RBBP6-like [Jatropha curcas]
15 Hb_091226_010 0.1105242909 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA isoform X1 [Jatropha curcas]
16 Hb_055488_020 0.1146066338 - - PREDICTED: uncharacterized protein LOC105641270 [Jatropha curcas]
17 Hb_002311_140 0.11540357 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 15-like [Jatropha curcas]
18 Hb_000454_140 0.1155939809 transcription factor TF Family: bZIP PREDICTED: transcription factor RF2a-like [Jatropha curcas]
19 Hb_006711_070 0.1162273289 - - hypothetical protein RCOM_1336320 [Ricinus communis]
20 Hb_000608_280 0.1190502304 - - Aspartic proteinase Asp1 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_003078_030 Hb_003078_030 Hb_000056_300 Hb_000056_300 Hb_003078_030--Hb_000056_300 Hb_000186_200 Hb_000186_200 Hb_003078_030--Hb_000186_200 Hb_000163_230 Hb_000163_230 Hb_003078_030--Hb_000163_230 Hb_001009_090 Hb_001009_090 Hb_003078_030--Hb_001009_090 Hb_005000_300 Hb_005000_300 Hb_003078_030--Hb_005000_300 Hb_000836_370 Hb_000836_370 Hb_003078_030--Hb_000836_370 Hb_128695_030 Hb_128695_030 Hb_000056_300--Hb_128695_030 Hb_005054_310 Hb_005054_310 Hb_000056_300--Hb_005054_310 Hb_000056_300--Hb_000836_370 Hb_005649_090 Hb_005649_090 Hb_000056_300--Hb_005649_090 Hb_000056_300--Hb_005000_300 Hb_002701_210 Hb_002701_210 Hb_000186_200--Hb_002701_210 Hb_000084_240 Hb_000084_240 Hb_000186_200--Hb_000084_240 Hb_000186_200--Hb_001009_090 Hb_000045_260 Hb_000045_260 Hb_000186_200--Hb_000045_260 Hb_000186_200--Hb_000163_230 Hb_000454_140 Hb_000454_140 Hb_000163_230--Hb_000454_140 Hb_000163_230--Hb_001009_090 Hb_000163_230--Hb_000045_260 Hb_000671_060 Hb_000671_060 Hb_000163_230--Hb_000671_060 Hb_001410_130 Hb_001410_130 Hb_001009_090--Hb_001410_130 Hb_004526_010 Hb_004526_010 Hb_001009_090--Hb_004526_010 Hb_000941_080 Hb_000941_080 Hb_001009_090--Hb_000941_080 Hb_001009_090--Hb_005649_090 Hb_005000_300--Hb_000836_370 Hb_000465_080 Hb_000465_080 Hb_005000_300--Hb_000465_080 Hb_001231_080 Hb_001231_080 Hb_005000_300--Hb_001231_080 Hb_005000_300--Hb_005054_310 Hb_000836_370--Hb_005054_310 Hb_000836_370--Hb_001231_080 Hb_001484_100 Hb_001484_100 Hb_000836_370--Hb_001484_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.4286 79.4578 38.544 29.7881 18.8825 17.5794
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.3343 9.26286 8.3461 11.6127 9.295

CAGE analysis