Hb_000186_200

Information

Type -
Description -
Location Contig186: 254312-265229
Sequence    

Annotation

kegg
ID pop:POPTR_0011s01620g
description POPTRDRAFT_568093; phosphatase-like protein Psc923
nr
ID XP_011002563.1
description PREDICTED: UBA and UBX domain-containing protein At4g15410-like [Populus euphratica]
swissprot
ID Q8RWU7
description Plant UBX domain-containing protein 4 OS=Arabidopsis thaliana GN=PUX4 PE=1 SV=1
trembl
ID B9HZB4
description Phosphatase-like protein Psc923 OS=Populus trichocarpa GN=POPTR_0011s01620g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18237: 254565-255740 , PASA_asmbl_18238: 254551-265279
cDNA
(Sanger)
(ID:Location)		 018_I04.ab1: 254568-255109 , 023_L12.ab1: 254568-255180 , 036_L09r.ab1: 253531-253890 , 045_G15.ab1: 254559-264569 , 045_L15.ab1: 254559-264568

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000186_200 0.0 - - PREDICTED: UBA and UBX domain-containing protein At4g15410-like [Populus euphratica]
2 Hb_002701_210 0.0723956235 - - Protein COBRA precursor, putative [Ricinus communis]
3 Hb_000084_240 0.0756619752 - - PREDICTED: F-box/kelch-repeat protein At1g57790-like [Jatropha curcas]
4 Hb_003078_030 0.0820868098 - - PREDICTED: E3 ubiquitin-protein ligase CHIP [Jatropha curcas]
5 Hb_001009_090 0.0916472602 - - CDK protein [Hevea brasiliensis]
6 Hb_000045_260 0.0970323982 - - protein with unknown function [Ricinus communis]
7 Hb_000163_230 0.100910462 - - Phytochrome A-associated F-box protein, putative [Ricinus communis]
8 Hb_002897_050 0.1014985549 - - PREDICTED: uncharacterized protein LOC105649158 [Jatropha curcas]
9 Hb_091226_010 0.1116397517 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA isoform X1 [Jatropha curcas]
10 Hb_004108_240 0.1125606761 - - hypothetical protein POPTR_0002s05550g [Populus trichocarpa]
11 Hb_001437_010 0.1150436277 - - PREDICTED: probable receptor-like protein kinase At1g33260 [Jatropha curcas]
12 Hb_007007_080 0.1162281148 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000134_340 0.1165751446 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 5 [Jatropha curcas]
14 Hb_000608_280 0.1182825014 - - Aspartic proteinase Asp1 precursor, putative [Ricinus communis]
15 Hb_048755_020 0.1191055946 - - hypothetical protein JCGZ_09860 [Jatropha curcas]
16 Hb_000179_240 0.1206130474 - - PREDICTED: threonine synthase 1, chloroplastic [Jatropha curcas]
17 Hb_001410_130 0.1227880454 - - hypothetical protein POPTR_0001s10880g [Populus trichocarpa]
18 Hb_006054_030 0.1228171252 - - PREDICTED: protein GPR107-like [Jatropha curcas]
19 Hb_000925_030 0.1232735047 - - ATP-dependent RNA helicase, putative [Ricinus communis]
20 Hb_000071_140 0.1237753453 - - PREDICTED: uncharacterized protein LOC105628258 [Jatropha curcas]

Gene co-expression network

sample Hb_000186_200 Hb_000186_200 Hb_002701_210 Hb_002701_210 Hb_000186_200--Hb_002701_210 Hb_000084_240 Hb_000084_240 Hb_000186_200--Hb_000084_240 Hb_003078_030 Hb_003078_030 Hb_000186_200--Hb_003078_030 Hb_001009_090 Hb_001009_090 Hb_000186_200--Hb_001009_090 Hb_000045_260 Hb_000045_260 Hb_000186_200--Hb_000045_260 Hb_000163_230 Hb_000163_230 Hb_000186_200--Hb_000163_230 Hb_002701_210--Hb_003078_030 Hb_002701_210--Hb_000084_240 Hb_002701_210--Hb_000163_230 Hb_002701_210--Hb_000045_260 Hb_004108_240 Hb_004108_240 Hb_002701_210--Hb_004108_240 Hb_005499_010 Hb_005499_010 Hb_000084_240--Hb_005499_010 Hb_002897_050 Hb_002897_050 Hb_000084_240--Hb_002897_050 Hb_000084_240--Hb_000045_260 Hb_002107_060 Hb_002107_060 Hb_000084_240--Hb_002107_060 Hb_011631_010 Hb_011631_010 Hb_000084_240--Hb_011631_010 Hb_000056_300 Hb_000056_300 Hb_003078_030--Hb_000056_300 Hb_003078_030--Hb_000163_230 Hb_003078_030--Hb_001009_090 Hb_005000_300 Hb_005000_300 Hb_003078_030--Hb_005000_300 Hb_000836_370 Hb_000836_370 Hb_003078_030--Hb_000836_370 Hb_001410_130 Hb_001410_130 Hb_001009_090--Hb_001410_130 Hb_004526_010 Hb_004526_010 Hb_001009_090--Hb_004526_010 Hb_001009_090--Hb_000163_230 Hb_000941_080 Hb_000941_080 Hb_001009_090--Hb_000941_080 Hb_005649_090 Hb_005649_090 Hb_001009_090--Hb_005649_090 Hb_000045_260--Hb_011631_010 Hb_000638_280 Hb_000638_280 Hb_000045_260--Hb_000638_280 Hb_000454_140 Hb_000454_140 Hb_000045_260--Hb_000454_140 Hb_000045_260--Hb_002897_050 Hb_000045_260--Hb_000163_230 Hb_000163_230--Hb_000454_140 Hb_000671_060 Hb_000671_060 Hb_000163_230--Hb_000671_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.5329 167.554 69.6773 56.6493 24.8168 24.3638
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.7306 22.9503 20.9846 21.6502 20.1778

CAGE analysis