Hb_005000_300

Information

Type transcription factor
Description TF Family: TRAF
Location Contig5000: 294541-299968
Sequence    

Annotation

kegg
ID rcu:RCOM_1047190
description Regulatory protein NPR1, putative
nr
ID AHG52897.1
description putative regulatory protein NPR1 [Hevea brasiliensis]
swissprot
ID Q9SZI3
description Regulatory protein NPR2 OS=Arabidopsis thaliana GN=NPR2 PE=3 SV=1
trembl
ID W0NTQ7
description Putative regulatory protein NPR1 OS=Hevea brasiliensis GN=NPR1 PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45832: 294558-296239
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005000_300 0.0 transcription factor TF Family: TRAF putative regulatory protein NPR1 [Hevea brasiliensis]
2 Hb_000836_370 0.072644327 - - PREDICTED: protein REVEILLE 3-like isoform X1 [Jatropha curcas]
3 Hb_000465_080 0.0742970725 - - PREDICTED: E3 ubiquitin-protein ligase RBBP6-like [Jatropha curcas]
4 Hb_000056_300 0.0893846128 - - PREDICTED: probable methyltransferase PMT2 isoform X2 [Jatropha curcas]
5 Hb_003078_030 0.0953181873 - - PREDICTED: E3 ubiquitin-protein ligase CHIP [Jatropha curcas]
6 Hb_001231_080 0.1008267597 - - PREDICTED: zinc finger BED domain-containing protein DAYSLEEPER-like isoform X1 [Fragaria vesca subsp. vesca]
7 Hb_005054_310 0.1038723003 - - PREDICTED: glycosyltransferase family 64 protein C4 [Jatropha curcas]
8 Hb_178127_010 0.1068559527 - - Ubiquitin ligase SINAT3, putative [Ricinus communis]
9 Hb_128695_030 0.1101089638 - - heat shock protein, putative [Ricinus communis]
10 Hb_004218_090 0.1131361468 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
11 Hb_003506_070 0.1199544108 - - PREDICTED: calcineurin B-like protein 7 isoform X2 [Jatropha curcas]
12 Hb_003228_030 0.1216849499 - - PREDICTED: transmembrane and coiled-coil domain-containing protein 1 [Jatropha curcas]
13 Hb_018301_010 0.1277331067 - - PREDICTED: putative receptor-like protein kinase At4g00960 [Jatropha curcas]
14 Hb_012725_040 0.1340838046 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
15 Hb_006711_070 0.1355885998 - - hypothetical protein RCOM_1336320 [Ricinus communis]
16 Hb_011909_060 0.137101725 - - PREDICTED: zinc finger protein CONSTANS-LIKE 1 [Jatropha curcas]
17 Hb_000120_420 0.1388319306 - - PREDICTED: AT-rich interactive domain-containing protein 5-like [Jatropha curcas]
18 Hb_000363_280 0.139392812 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: angiomotin [Cucumis sativus]
19 Hb_009771_100 0.1396334842 - - PREDICTED: uncharacterized protein LOC105141784 [Populus euphratica]
20 Hb_046117_010 0.1397758952 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 3 [Jatropha curcas]

Gene co-expression network

sample Hb_005000_300 Hb_005000_300 Hb_000836_370 Hb_000836_370 Hb_005000_300--Hb_000836_370 Hb_000465_080 Hb_000465_080 Hb_005000_300--Hb_000465_080 Hb_000056_300 Hb_000056_300 Hb_005000_300--Hb_000056_300 Hb_003078_030 Hb_003078_030 Hb_005000_300--Hb_003078_030 Hb_001231_080 Hb_001231_080 Hb_005000_300--Hb_001231_080 Hb_005054_310 Hb_005054_310 Hb_005000_300--Hb_005054_310 Hb_000836_370--Hb_005054_310 Hb_000836_370--Hb_000056_300 Hb_000836_370--Hb_001231_080 Hb_000836_370--Hb_003078_030 Hb_001484_100 Hb_001484_100 Hb_000836_370--Hb_001484_100 Hb_004218_090 Hb_004218_090 Hb_000465_080--Hb_004218_090 Hb_046117_010 Hb_046117_010 Hb_000465_080--Hb_046117_010 Hb_003506_070 Hb_003506_070 Hb_000465_080--Hb_003506_070 Hb_003120_050 Hb_003120_050 Hb_000465_080--Hb_003120_050 Hb_000465_080--Hb_003078_030 Hb_128695_030 Hb_128695_030 Hb_000056_300--Hb_128695_030 Hb_000056_300--Hb_003078_030 Hb_000056_300--Hb_005054_310 Hb_005649_090 Hb_005649_090 Hb_000056_300--Hb_005649_090 Hb_000186_200 Hb_000186_200 Hb_003078_030--Hb_000186_200 Hb_000163_230 Hb_000163_230 Hb_003078_030--Hb_000163_230 Hb_001009_090 Hb_001009_090 Hb_003078_030--Hb_001009_090 Hb_001231_080--Hb_000056_300 Hb_002942_110 Hb_002942_110 Hb_001231_080--Hb_002942_110 Hb_001231_080--Hb_128695_030 Hb_004195_120 Hb_004195_120 Hb_001231_080--Hb_004195_120 Hb_003228_030 Hb_003228_030 Hb_005054_310--Hb_003228_030 Hb_000227_310 Hb_000227_310 Hb_005054_310--Hb_000227_310 Hb_005054_310--Hb_128695_030 Hb_005054_310--Hb_001484_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.0158 60.2964 23.1259 16.0594 14.599 14.2249
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.91658 5.51939 7.58379 7.59541 3.73022

CAGE analysis