Hb_003228_030

Information

Type -
Description -
Location Contig3228: 92072-92650
Sequence    

Annotation

kegg
ID rcu:RCOM_0279040
description Transmembrane and coiled-coil domains protein, putative
nr
ID XP_012076053.1
description PREDICTED: transmembrane and coiled-coil domain-containing protein 1 [Jatropha curcas]
swissprot
ID Q5I0H4
description Transmembrane and coiled-coil domains protein 1 OS=Rattus norvegicus GN=Tmco1 PE=2 SV=1
trembl
ID A0A067KED3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12765 PE=4 SV=1
Gene Ontology
ID GO:0016021
description transmembrane and coiled-coil domain-containing protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34226: 91985-92966
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003228_030 0.0 - - PREDICTED: transmembrane and coiled-coil domain-containing protein 1 [Jatropha curcas]
2 Hb_005054_310 0.0743185631 - - PREDICTED: glycosyltransferase family 64 protein C4 [Jatropha curcas]
3 Hb_000336_110 0.095246658 - - Uracil phosphoribosyltransferase, putative [Ricinus communis]
4 Hb_005610_080 0.0953683384 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000890_010 0.1060842849 - - conserved hypothetical protein [Ricinus communis]
6 Hb_006132_040 0.1071269226 - - hypothetical protein JCGZ_14390 [Jatropha curcas]
7 Hb_000227_310 0.1073834643 - - PREDICTED: cyclin-T1-4-like isoform X2 [Jatropha curcas]
8 Hb_001454_220 0.1114110445 - - PREDICTED: ubiquitin-like-specific protease ESD4 [Jatropha curcas]
9 Hb_000345_490 0.1135935914 - - PREDICTED: mitochondrial Rho GTPase 1-like [Jatropha curcas]
10 Hb_000056_300 0.114435181 - - PREDICTED: probable methyltransferase PMT2 isoform X2 [Jatropha curcas]
11 Hb_000120_420 0.1153613709 - - PREDICTED: AT-rich interactive domain-containing protein 5-like [Jatropha curcas]
12 Hb_000363_280 0.1165174757 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: angiomotin [Cucumis sativus]
13 Hb_128695_030 0.1170443766 - - heat shock protein, putative [Ricinus communis]
14 Hb_178127_010 0.1172551706 - - Ubiquitin ligase SINAT3, putative [Ricinus communis]
15 Hb_011909_060 0.1188392214 - - PREDICTED: zinc finger protein CONSTANS-LIKE 1 [Jatropha curcas]
16 Hb_003430_030 0.1190539951 - - PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp31 [Jatropha curcas]
17 Hb_000836_370 0.1192151831 - - PREDICTED: protein REVEILLE 3-like isoform X1 [Jatropha curcas]
18 Hb_031711_010 0.1202615921 - - PREDICTED: CDPK-related kinase 4-like isoform X1 [Jatropha curcas]
19 Hb_000625_120 0.1210210563 - - PREDICTED: calcium-dependent protein kinase 28 [Jatropha curcas]
20 Hb_005000_300 0.1216849499 transcription factor TF Family: TRAF putative regulatory protein NPR1 [Hevea brasiliensis]

Gene co-expression network

sample Hb_003228_030 Hb_003228_030 Hb_005054_310 Hb_005054_310 Hb_003228_030--Hb_005054_310 Hb_000336_110 Hb_000336_110 Hb_003228_030--Hb_000336_110 Hb_005610_080 Hb_005610_080 Hb_003228_030--Hb_005610_080 Hb_000890_010 Hb_000890_010 Hb_003228_030--Hb_000890_010 Hb_006132_040 Hb_006132_040 Hb_003228_030--Hb_006132_040 Hb_000227_310 Hb_000227_310 Hb_003228_030--Hb_000227_310 Hb_000836_370 Hb_000836_370 Hb_005054_310--Hb_000836_370 Hb_000056_300 Hb_000056_300 Hb_005054_310--Hb_000056_300 Hb_005054_310--Hb_000227_310 Hb_128695_030 Hb_128695_030 Hb_005054_310--Hb_128695_030 Hb_001484_100 Hb_001484_100 Hb_005054_310--Hb_001484_100 Hb_000264_080 Hb_000264_080 Hb_000336_110--Hb_000264_080 Hb_000363_280 Hb_000363_280 Hb_000336_110--Hb_000363_280 Hb_000120_420 Hb_000120_420 Hb_000336_110--Hb_000120_420 Hb_009771_100 Hb_009771_100 Hb_000336_110--Hb_009771_100 Hb_167381_020 Hb_167381_020 Hb_000336_110--Hb_167381_020 Hb_000069_590 Hb_000069_590 Hb_000336_110--Hb_000069_590 Hb_005610_080--Hb_006132_040 Hb_000024_120 Hb_000024_120 Hb_005610_080--Hb_000024_120 Hb_003430_030 Hb_003430_030 Hb_005610_080--Hb_003430_030 Hb_000345_490 Hb_000345_490 Hb_005610_080--Hb_000345_490 Hb_005054_190 Hb_005054_190 Hb_005610_080--Hb_005054_190 Hb_005610_080--Hb_000890_010 Hb_000890_010--Hb_006132_040 Hb_013405_150 Hb_013405_150 Hb_000890_010--Hb_013405_150 Hb_000077_120 Hb_000077_120 Hb_000890_010--Hb_000077_120 Hb_004236_030 Hb_004236_030 Hb_000890_010--Hb_004236_030 Hb_044155_010 Hb_044155_010 Hb_000890_010--Hb_044155_010 Hb_006132_040--Hb_004236_030 Hb_003992_180 Hb_003992_180 Hb_006132_040--Hb_003992_180 Hb_006132_040--Hb_000227_310 Hb_008165_030 Hb_008165_030 Hb_006132_040--Hb_008165_030 Hb_007017_070 Hb_007017_070 Hb_000227_310--Hb_007017_070 Hb_030545_030 Hb_030545_030 Hb_000227_310--Hb_030545_030 Hb_000926_010 Hb_000926_010 Hb_000227_310--Hb_000926_010 Hb_000227_310--Hb_000264_080 Hb_007576_220 Hb_007576_220 Hb_000227_310--Hb_007576_220 Hb_004195_120 Hb_004195_120 Hb_000227_310--Hb_004195_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
93.4562 209.007 146.606 62.3059 111.4 61.0802
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
36.4304 23.8575 23.2982 33.27 26.0896

CAGE analysis