Hb_000836_370

Information

Type -
Description -
Location Contig836: 290983-296286
Sequence    

Annotation

kegg
ID pop:POPTR_0014s08520g
description POPTRDRAFT_572303; myb family transcription factor family protein
nr
ID XP_012083312.1
description PREDICTED: protein REVEILLE 3-like isoform X1 [Jatropha curcas]
swissprot
ID Q8H0W3
description Protein REVEILLE 6 OS=Arabidopsis thaliana GN=RVE6 PE=2 SV=1
trembl
ID A0A067K0G7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14339 PE=4 SV=1
Gene Ontology
ID GO:0003677
description protein reveille 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59949: 291015-296186 , PASA_asmbl_59950: 291015-296186 , PASA_asmbl_59951: 291885-292135 , PASA_asmbl_59955: 293320-296242
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000836_370 0.0 - - PREDICTED: protein REVEILLE 3-like isoform X1 [Jatropha curcas]
2 Hb_005054_310 0.0696834327 - - PREDICTED: glycosyltransferase family 64 protein C4 [Jatropha curcas]
3 Hb_005000_300 0.072644327 transcription factor TF Family: TRAF putative regulatory protein NPR1 [Hevea brasiliensis]
4 Hb_000056_300 0.0813356373 - - PREDICTED: probable methyltransferase PMT2 isoform X2 [Jatropha curcas]
5 Hb_001231_080 0.0860480105 - - PREDICTED: zinc finger BED domain-containing protein DAYSLEEPER-like isoform X1 [Fragaria vesca subsp. vesca]
6 Hb_003078_030 0.0958352855 - - PREDICTED: E3 ubiquitin-protein ligase CHIP [Jatropha curcas]
7 Hb_001484_100 0.1016873771 - - PREDICTED: cyanate hydratase [Jatropha curcas]
8 Hb_128695_030 0.1030196517 - - heat shock protein, putative [Ricinus communis]
9 Hb_000465_080 0.1081047559 - - PREDICTED: E3 ubiquitin-protein ligase RBBP6-like [Jatropha curcas]
10 Hb_005649_090 0.1101114897 - - PREDICTED: ninja-family protein AFP3-like [Jatropha curcas]
11 Hb_004195_120 0.1174813683 desease resistance Gene Name: NB-ARC Disease resistance protein RGA2, putative [Ricinus communis]
12 Hb_003228_030 0.1192151831 - - PREDICTED: transmembrane and coiled-coil domain-containing protein 1 [Jatropha curcas]
13 Hb_000227_310 0.120849962 - - PREDICTED: cyclin-T1-4-like isoform X2 [Jatropha curcas]
14 Hb_000120_420 0.1210895767 - - PREDICTED: AT-rich interactive domain-containing protein 5-like [Jatropha curcas]
15 Hb_178127_010 0.1214681671 - - Ubiquitin ligase SINAT3, putative [Ricinus communis]
16 Hb_001369_770 0.1262577702 - - PREDICTED: AT-hook motif nuclear-localized protein 6-like [Jatropha curcas]
17 Hb_000363_280 0.127012923 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: angiomotin [Cucumis sativus]
18 Hb_000152_640 0.1280514163 - - PREDICTED: monocopper oxidase-like protein SKS1 [Jatropha curcas]
19 Hb_000264_080 0.1305236302 - - hypothetical protein JCGZ_21412 [Jatropha curcas]
20 Hb_003226_110 0.1318405006 - - PREDICTED: exocyst complex component SEC15B [Jatropha curcas]

Gene co-expression network

sample Hb_000836_370 Hb_000836_370 Hb_005054_310 Hb_005054_310 Hb_000836_370--Hb_005054_310 Hb_005000_300 Hb_005000_300 Hb_000836_370--Hb_005000_300 Hb_000056_300 Hb_000056_300 Hb_000836_370--Hb_000056_300 Hb_001231_080 Hb_001231_080 Hb_000836_370--Hb_001231_080 Hb_003078_030 Hb_003078_030 Hb_000836_370--Hb_003078_030 Hb_001484_100 Hb_001484_100 Hb_000836_370--Hb_001484_100 Hb_003228_030 Hb_003228_030 Hb_005054_310--Hb_003228_030 Hb_005054_310--Hb_000056_300 Hb_000227_310 Hb_000227_310 Hb_005054_310--Hb_000227_310 Hb_128695_030 Hb_128695_030 Hb_005054_310--Hb_128695_030 Hb_005054_310--Hb_001484_100 Hb_000465_080 Hb_000465_080 Hb_005000_300--Hb_000465_080 Hb_005000_300--Hb_000056_300 Hb_005000_300--Hb_003078_030 Hb_005000_300--Hb_001231_080 Hb_005000_300--Hb_005054_310 Hb_000056_300--Hb_128695_030 Hb_000056_300--Hb_003078_030 Hb_005649_090 Hb_005649_090 Hb_000056_300--Hb_005649_090 Hb_001231_080--Hb_000056_300 Hb_002942_110 Hb_002942_110 Hb_001231_080--Hb_002942_110 Hb_001231_080--Hb_128695_030 Hb_004195_120 Hb_004195_120 Hb_001231_080--Hb_004195_120 Hb_000186_200 Hb_000186_200 Hb_003078_030--Hb_000186_200 Hb_000163_230 Hb_000163_230 Hb_003078_030--Hb_000163_230 Hb_001009_090 Hb_001009_090 Hb_003078_030--Hb_001009_090 Hb_085364_010 Hb_085364_010 Hb_001484_100--Hb_085364_010 Hb_001484_100--Hb_003078_030 Hb_001484_100--Hb_005649_090 Hb_030545_030 Hb_030545_030 Hb_001484_100--Hb_030545_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.7147 64.421 29.1121 17.2991 15.3631 20.9624
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.12763 5.39766 4.5829 10.8645 5.64042

CAGE analysis