Hb_085364_010

Information

Type -
Description -
Location Contig85364: 212-915
Sequence    

Annotation

kegg
ID pop:POPTR_0009s16200g
description POPTRDRAFT_832942; hypothetical protein
nr
ID XP_011043354.1
description PREDICTED: nicalin-1-like [Populus euphratica]
swissprot
ID -
description -
trembl
ID B9HQ38
description Nicalin OS=Populus trichocarpa GN=POPTR_0009s16200g PE=3 SV=2
Gene Ontology
ID GO:0005739
description nicalin-1-like isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_085364_010 0.0 - - PREDICTED: nicalin-1-like [Populus euphratica]
2 Hb_002311_140 0.0886128737 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 15-like [Jatropha curcas]
3 Hb_001484_100 0.102363742 - - PREDICTED: cyanate hydratase [Jatropha curcas]
4 Hb_030545_030 0.1181447399 - - PREDICTED: uncharacterized protein LOC105648743 [Jatropha curcas]
5 Hb_003078_030 0.1198462701 - - PREDICTED: E3 ubiquitin-protein ligase CHIP [Jatropha curcas]
6 Hb_004526_010 0.122312846 - - signal recognition particle receptor alpha subunit, putative [Ricinus communis]
7 Hb_002812_010 0.1238556801 - - PREDICTED: chitin elicitor receptor kinase 1 isoform X1 [Jatropha curcas]
8 Hb_056987_010 0.1253381957 - - DNA-damage-repair/toleration protein DRT111, chloroplastic [Glycine soja]
9 Hb_005649_090 0.1257499997 - - PREDICTED: ninja-family protein AFP3-like [Jatropha curcas]
10 Hb_003640_020 0.1266768273 - - pelota, putative [Ricinus communis]
11 Hb_000227_310 0.1279163349 - - PREDICTED: cyclin-T1-4-like isoform X2 [Jatropha curcas]
12 Hb_007017_070 0.1288603199 - - PREDICTED: phospholipid-transporting ATPase 3 isoform X1 [Jatropha curcas]
13 Hb_000925_030 0.1302366862 - - ATP-dependent RNA helicase, putative [Ricinus communis]
14 Hb_102438_030 0.130715644 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 37-like isoform X1 [Jatropha curcas]
15 Hb_152910_010 0.1309332216 - - PREDICTED: uncharacterized protein LOC105632212 [Jatropha curcas]
16 Hb_000700_060 0.1316477149 - - PREDICTED: uncharacterized protein LOC105644416 [Jatropha curcas]
17 Hb_008406_040 0.1331840045 - - -
18 Hb_005203_020 0.1344937682 transcription factor TF Family: TRAF Regulatory protein NPR1, putative [Ricinus communis]
19 Hb_000866_450 0.1362385191 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
20 Hb_002107_060 0.1363781139 - - PREDICTED: uncharacterized protein LOC105635312 [Jatropha curcas]

Gene co-expression network

sample Hb_085364_010 Hb_085364_010 Hb_002311_140 Hb_002311_140 Hb_085364_010--Hb_002311_140 Hb_001484_100 Hb_001484_100 Hb_085364_010--Hb_001484_100 Hb_030545_030 Hb_030545_030 Hb_085364_010--Hb_030545_030 Hb_003078_030 Hb_003078_030 Hb_085364_010--Hb_003078_030 Hb_004526_010 Hb_004526_010 Hb_085364_010--Hb_004526_010 Hb_002812_010 Hb_002812_010 Hb_085364_010--Hb_002812_010 Hb_000803_180 Hb_000803_180 Hb_002311_140--Hb_000803_180 Hb_000671_060 Hb_000671_060 Hb_002311_140--Hb_000671_060 Hb_000261_280 Hb_000261_280 Hb_002311_140--Hb_000261_280 Hb_002311_140--Hb_003078_030 Hb_000163_230 Hb_000163_230 Hb_002311_140--Hb_000163_230 Hb_005054_310 Hb_005054_310 Hb_001484_100--Hb_005054_310 Hb_000836_370 Hb_000836_370 Hb_001484_100--Hb_000836_370 Hb_001484_100--Hb_003078_030 Hb_005649_090 Hb_005649_090 Hb_001484_100--Hb_005649_090 Hb_001484_100--Hb_030545_030 Hb_002903_140 Hb_002903_140 Hb_030545_030--Hb_002903_140 Hb_102438_030 Hb_102438_030 Hb_030545_030--Hb_102438_030 Hb_000227_310 Hb_000227_310 Hb_030545_030--Hb_000227_310 Hb_007017_070 Hb_007017_070 Hb_030545_030--Hb_007017_070 Hb_008165_030 Hb_008165_030 Hb_030545_030--Hb_008165_030 Hb_096819_010 Hb_096819_010 Hb_030545_030--Hb_096819_010 Hb_000056_300 Hb_000056_300 Hb_003078_030--Hb_000056_300 Hb_000186_200 Hb_000186_200 Hb_003078_030--Hb_000186_200 Hb_003078_030--Hb_000163_230 Hb_001009_090 Hb_001009_090 Hb_003078_030--Hb_001009_090 Hb_005000_300 Hb_005000_300 Hb_003078_030--Hb_005000_300 Hb_003078_030--Hb_000836_370 Hb_004319_050 Hb_004319_050 Hb_004526_010--Hb_004319_050 Hb_000796_120 Hb_000796_120 Hb_004526_010--Hb_000796_120 Hb_004526_010--Hb_030545_030 Hb_003992_180 Hb_003992_180 Hb_004526_010--Hb_003992_180 Hb_009486_160 Hb_009486_160 Hb_004526_010--Hb_009486_160 Hb_159295_010 Hb_159295_010 Hb_004526_010--Hb_159295_010 Hb_002812_010--Hb_009486_160 Hb_001257_100 Hb_001257_100 Hb_002812_010--Hb_001257_100 Hb_001862_110 Hb_001862_110 Hb_002812_010--Hb_001862_110 Hb_002812_010--Hb_159295_010 Hb_000926_150 Hb_000926_150 Hb_002812_010--Hb_000926_150 Hb_008948_140 Hb_008948_140 Hb_002812_010--Hb_008948_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.71581 7.01771 3.93069 3.12273 2.24871 2.13917
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.10611 1.93126 0.33068 2.19742 1.09572

CAGE analysis