Hb_005054_310

Information

Type -
Description -
Location Contig5054: 232782-239285
Sequence    

Annotation

kegg
ID rcu:RCOM_0592150
description Exostosin-2, putative (EC:2.4.1.223)
nr
ID XP_012087784.1
description PREDICTED: glycosyltransferase family 64 protein C4 [Jatropha curcas]
swissprot
ID Q9LY62
description Glycosyltransferase family 64 protein C4 OS=Arabidopsis thaliana GN=EPC1 PE=2 SV=1
trembl
ID A0A067LJJ0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01315 PE=4 SV=1
Gene Ontology
ID GO:0005768
description glycosyltransferase family 64 protein c4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46088: 232917-239275 , PASA_asmbl_46089: 236384-236791 , PASA_asmbl_46090: 233689-234113
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005054_310 0.0 - - PREDICTED: glycosyltransferase family 64 protein C4 [Jatropha curcas]
2 Hb_000836_370 0.0696834327 - - PREDICTED: protein REVEILLE 3-like isoform X1 [Jatropha curcas]
3 Hb_003228_030 0.0743185631 - - PREDICTED: transmembrane and coiled-coil domain-containing protein 1 [Jatropha curcas]
4 Hb_000056_300 0.0750830155 - - PREDICTED: probable methyltransferase PMT2 isoform X2 [Jatropha curcas]
5 Hb_000227_310 0.0948678251 - - PREDICTED: cyclin-T1-4-like isoform X2 [Jatropha curcas]
6 Hb_128695_030 0.0950706939 - - heat shock protein, putative [Ricinus communis]
7 Hb_001484_100 0.0977112943 - - PREDICTED: cyanate hydratase [Jatropha curcas]
8 Hb_003078_030 0.0983678212 - - PREDICTED: E3 ubiquitin-protein ligase CHIP [Jatropha curcas]
9 Hb_005000_300 0.1038723003 transcription factor TF Family: TRAF putative regulatory protein NPR1 [Hevea brasiliensis]
10 Hb_004195_120 0.1045970821 desease resistance Gene Name: NB-ARC Disease resistance protein RGA2, putative [Ricinus communis]
11 Hb_000890_010 0.10610912 - - conserved hypothetical protein [Ricinus communis]
12 Hb_005610_080 0.107813596 - - conserved hypothetical protein [Ricinus communis]
13 Hb_005649_090 0.107889718 - - PREDICTED: ninja-family protein AFP3-like [Jatropha curcas]
14 Hb_000692_120 0.1088788745 - - ATP synthase subunit beta vacuolar, putative [Ricinus communis]
15 Hb_006132_040 0.109815708 - - hypothetical protein JCGZ_14390 [Jatropha curcas]
16 Hb_030545_030 0.1126859126 - - PREDICTED: uncharacterized protein LOC105648743 [Jatropha curcas]
17 Hb_000336_110 0.1130036512 - - Uracil phosphoribosyltransferase, putative [Ricinus communis]
18 Hb_000120_420 0.1152343973 - - PREDICTED: AT-rich interactive domain-containing protein 5-like [Jatropha curcas]
19 Hb_000152_640 0.1167406159 - - PREDICTED: monocopper oxidase-like protein SKS1 [Jatropha curcas]
20 Hb_000264_080 0.1193190373 - - hypothetical protein JCGZ_21412 [Jatropha curcas]

Gene co-expression network

sample Hb_005054_310 Hb_005054_310 Hb_000836_370 Hb_000836_370 Hb_005054_310--Hb_000836_370 Hb_003228_030 Hb_003228_030 Hb_005054_310--Hb_003228_030 Hb_000056_300 Hb_000056_300 Hb_005054_310--Hb_000056_300 Hb_000227_310 Hb_000227_310 Hb_005054_310--Hb_000227_310 Hb_128695_030 Hb_128695_030 Hb_005054_310--Hb_128695_030 Hb_001484_100 Hb_001484_100 Hb_005054_310--Hb_001484_100 Hb_005000_300 Hb_005000_300 Hb_000836_370--Hb_005000_300 Hb_000836_370--Hb_000056_300 Hb_001231_080 Hb_001231_080 Hb_000836_370--Hb_001231_080 Hb_003078_030 Hb_003078_030 Hb_000836_370--Hb_003078_030 Hb_000836_370--Hb_001484_100 Hb_000336_110 Hb_000336_110 Hb_003228_030--Hb_000336_110 Hb_005610_080 Hb_005610_080 Hb_003228_030--Hb_005610_080 Hb_000890_010 Hb_000890_010 Hb_003228_030--Hb_000890_010 Hb_006132_040 Hb_006132_040 Hb_003228_030--Hb_006132_040 Hb_003228_030--Hb_000227_310 Hb_000056_300--Hb_128695_030 Hb_000056_300--Hb_003078_030 Hb_005649_090 Hb_005649_090 Hb_000056_300--Hb_005649_090 Hb_000056_300--Hb_005000_300 Hb_007017_070 Hb_007017_070 Hb_000227_310--Hb_007017_070 Hb_030545_030 Hb_030545_030 Hb_000227_310--Hb_030545_030 Hb_000926_010 Hb_000926_010 Hb_000227_310--Hb_000926_010 Hb_000264_080 Hb_000264_080 Hb_000227_310--Hb_000264_080 Hb_007576_220 Hb_007576_220 Hb_000227_310--Hb_007576_220 Hb_004195_120 Hb_004195_120 Hb_000227_310--Hb_004195_120 Hb_178127_010 Hb_178127_010 Hb_128695_030--Hb_178127_010 Hb_001565_020 Hb_001565_020 Hb_128695_030--Hb_001565_020 Hb_002942_110 Hb_002942_110 Hb_128695_030--Hb_002942_110 Hb_128695_030--Hb_000836_370 Hb_085364_010 Hb_085364_010 Hb_001484_100--Hb_085364_010 Hb_001484_100--Hb_003078_030 Hb_001484_100--Hb_005649_090 Hb_001484_100--Hb_030545_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.8314 75.918 50.2496 24.9258 27.6016 24.4793
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.98362 6.32034 6.77011 16.7596 8.45262

CAGE analysis