Hb_006132_040

Information

Type -
Description -
Location Contig6132: 21594-29618
Sequence    

Annotation

kegg
ID rcu:RCOM_1615650
description Minor histocompatibility antigen H13, putative
nr
ID KDP28619.1
description hypothetical protein JCGZ_14390 [Jatropha curcas]
swissprot
ID Q0WMJ8
description Signal peptide peptidase-like 4 OS=Arabidopsis thaliana GN=SPPL4 PE=2 SV=1
trembl
ID A0A067K9X9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14390 PE=4 SV=1
Gene Ontology
ID GO:0016021
description signal peptide peptidase-like 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51103: 21725-25586 , PASA_asmbl_51104: 21811-29572
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006132_040 0.0 - - hypothetical protein JCGZ_14390 [Jatropha curcas]
2 Hb_005610_080 0.0697979895 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000890_010 0.0765157979 - - conserved hypothetical protein [Ricinus communis]
4 Hb_004236_030 0.0805659548 - - unknown [Lotus japonicus]
5 Hb_003992_180 0.0849167856 - - PREDICTED: methyl-CpG-binding domain-containing protein 11 isoform X1 [Jatropha curcas]
6 Hb_000227_310 0.0881188258 - - PREDICTED: cyclin-T1-4-like isoform X2 [Jatropha curcas]
7 Hb_008165_030 0.0960157828 - - PREDICTED: uncharacterized protein LOC105641288 [Jatropha curcas]
8 Hb_030545_030 0.0960407867 - - PREDICTED: uncharacterized protein LOC105648743 [Jatropha curcas]
9 Hb_007017_070 0.0972152808 - - PREDICTED: phospholipid-transporting ATPase 3 isoform X1 [Jatropha curcas]
10 Hb_013405_150 0.1011237171 - - PREDICTED: actin cytoskeleton-regulatory complex protein pan1 [Jatropha curcas]
11 Hb_001558_060 0.1033028538 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 17 isoform X2 [Jatropha curcas]
12 Hb_044155_010 0.103666862 - - PREDICTED: probable cadmium/zinc-transporting ATPase HMA1, chloroplastic [Jatropha curcas]
13 Hb_000723_110 0.1047542242 - - PREDICTED: TSL-kinase interacting protein 1 [Jatropha curcas]
14 Hb_004319_070 0.1049148918 - - hypothetical protein RCOM_0852460 [Ricinus communis]
15 Hb_003228_030 0.1071269226 - - PREDICTED: transmembrane and coiled-coil domain-containing protein 1 [Jatropha curcas]
16 Hb_005054_310 0.109815708 - - PREDICTED: glycosyltransferase family 64 protein C4 [Jatropha curcas]
17 Hb_102438_030 0.1102944692 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 37-like isoform X1 [Jatropha curcas]
18 Hb_000024_120 0.1108005386 - - PREDICTED: uncharacterized protein LOC105122546 isoform X1 [Populus euphratica]
19 Hb_021530_010 0.1108201996 - - PREDICTED: la protein 1 [Jatropha curcas]
20 Hb_000077_120 0.1110680973 - - PREDICTED: two pore calcium channel protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_006132_040 Hb_006132_040 Hb_005610_080 Hb_005610_080 Hb_006132_040--Hb_005610_080 Hb_000890_010 Hb_000890_010 Hb_006132_040--Hb_000890_010 Hb_004236_030 Hb_004236_030 Hb_006132_040--Hb_004236_030 Hb_003992_180 Hb_003992_180 Hb_006132_040--Hb_003992_180 Hb_000227_310 Hb_000227_310 Hb_006132_040--Hb_000227_310 Hb_008165_030 Hb_008165_030 Hb_006132_040--Hb_008165_030 Hb_000024_120 Hb_000024_120 Hb_005610_080--Hb_000024_120 Hb_003430_030 Hb_003430_030 Hb_005610_080--Hb_003430_030 Hb_000345_490 Hb_000345_490 Hb_005610_080--Hb_000345_490 Hb_005054_190 Hb_005054_190 Hb_005610_080--Hb_005054_190 Hb_005610_080--Hb_000890_010 Hb_013405_150 Hb_013405_150 Hb_000890_010--Hb_013405_150 Hb_000077_120 Hb_000077_120 Hb_000890_010--Hb_000077_120 Hb_000890_010--Hb_004236_030 Hb_044155_010 Hb_044155_010 Hb_000890_010--Hb_044155_010 Hb_000579_190 Hb_000579_190 Hb_004236_030--Hb_000579_190 Hb_001558_060 Hb_001558_060 Hb_004236_030--Hb_001558_060 Hb_000375_290 Hb_000375_290 Hb_004236_030--Hb_000375_290 Hb_002107_060 Hb_002107_060 Hb_004236_030--Hb_002107_060 Hb_030545_030 Hb_030545_030 Hb_003992_180--Hb_030545_030 Hb_006615_030 Hb_006615_030 Hb_003992_180--Hb_006615_030 Hb_012305_140 Hb_012305_140 Hb_003992_180--Hb_012305_140 Hb_004526_010 Hb_004526_010 Hb_003992_180--Hb_004526_010 Hb_003992_180--Hb_001558_060 Hb_005694_130 Hb_005694_130 Hb_003992_180--Hb_005694_130 Hb_007017_070 Hb_007017_070 Hb_000227_310--Hb_007017_070 Hb_000227_310--Hb_030545_030 Hb_000926_010 Hb_000926_010 Hb_000227_310--Hb_000926_010 Hb_000264_080 Hb_000264_080 Hb_000227_310--Hb_000264_080 Hb_007576_220 Hb_007576_220 Hb_000227_310--Hb_007576_220 Hb_004195_120 Hb_004195_120 Hb_000227_310--Hb_004195_120 Hb_002903_140 Hb_002903_140 Hb_008165_030--Hb_002903_140 Hb_008165_030--Hb_030545_030 Hb_001674_040 Hb_001674_040 Hb_008165_030--Hb_001674_040 Hb_010287_030 Hb_010287_030 Hb_008165_030--Hb_010287_030 Hb_096819_010 Hb_096819_010 Hb_008165_030--Hb_096819_010 Hb_004032_230 Hb_004032_230 Hb_008165_030--Hb_004032_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
26.1456 67.4762 61.0378 17.0593 31.014 20.7188
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.38104 13.8037 10.0088 19.0154 16.4082

CAGE analysis